Browse Element(s) Details


Os.9089.1.S1_at

Description gb:AK066233.1
DB_XREF= gi:32976251
TID=Os.9089.1
CNT=45
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.9089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013056M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056M18, full insert sequence.
FL= gb:AK062019.1 gb:AK066233.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g369309/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36900OsAffx.11357.1.S1_at11/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.22442.1.S1_x_at3/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900Os.6502.1.A1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.3521.1.S1_x_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36900OsAffx.1331.1.S1_at1/111+20876458..20885520hypothetical protein
LOC_Os01g36910Os.35344.3.S1_x_at10/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910Os.35344.18.S1_x_at8/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36910OsAffx.22940.5.S1_x_at3/111+20892716..20896877Transposable element protein, putative, MuDR
LOC_Os01g36920Os.14280.2.S1_x_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_a_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.2.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.50777.1.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_x_at8/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_at6/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.3.S1_x_at5/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36930Os.40926.1.S1_x_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.40926.1.S1_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.9089.1.S1_at9/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36940Os.40925.1.S1_at8/111+20922069..20925696F-box domain containing protein, expressed
LOC_Os01g36950Os.4378.2.S1_a_at11/111+20926161..20929106expressed protein
LOC_Os01g36950OsAffx.2171.1.S1_at11/111+20926161..20929106expressed protein
LOC_Os01g36950Os.4378.4.S1_x_at10/111+20926161..20929106expressed protein
LOC_Os01g36960OsAffx.19542.3.S1_x_at10/111+20939332..20943554retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016579biological_processprotein deubiquitination
GO:0004843molecular_functionubiquitin-specific protease activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9089.1.S1_at--660--8891NONE
TGAGGGTTCATCAAGCAATGCTGGG
NONE
Os.9089.1.S1_at--885--571NONE
ATCCAGCATGGATATTGACAAAGCC
NONE
Os.9089.1.S1_at--1001--4791Chr01:20908758..20908782 (25 bp)
GCTCGTGTTATCTGAATTGGAATGC
LOC_Os01g36930
Os.9089.1.S1_at--577--591Chr01:20908737..20908761 (25 bp)
ATGCCAGACAGGCTGATGAGCTGAT
LOC_Os01g36930
Os.9089.1.S1_at--710--5891Chr01:20908720..20908744 (25 bp)
GAGCTGATTTGTTTACATTTCTCAA
LOC_Os01g36930
Os.9089.1.S1_at--1025--2811Chr01:20908697..20908721 (25 bp)
AAGTTGCCAGTAGTTTGCTTGCCTT
LOC_Os01g36930
Os.9089.1.S1_at--340--9071Chr01:20908682..20908706 (25 bp)
TGCTTGCCTTTTGTAATGCATGAGC
LOC_Os01g36930
Os.9089.1.S1_at--214--5891Chr01:20908661..20908685 (25 bp)
GAGCGAACGTATTATTGATTTTTCC
LOC_Os01g36930
Os.9089.1.S1_at--430--7371Chr01:20908608..20908632 (25 bp)
GTGACTTGCATTGGTGCTGGTGTTT
LOC_Os01g36930
Os.9089.1.S1_at--472--7131Chr01:20908582..20908606 (25 bp)
GTCGGTGGTCACTGGGACTTTAGAC
LOC_Os01g36930
Os.9089.1.S1_at--1002--10171Chr01:20908507..20908531 (25 bp)
TATACTGCAAAGAAACTGAGCGGAA
LOC_Os01g36930
Target Sequence 
TGAGGGTTCATCAAGCAATGCTGGGGAATCATCCAGCATGGATATTGACAAAGCCNATTCTTCTGTGCCAAAGAAACANT
TGACTGGCATCTATGATTTAATTGCTGTTTTGACGCACAAAGGGAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTT
AAGCAAGATGACGGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGAGATTTTAAAGTTATC
TGGTGGAGGCGACTGGCACATGGCTTACATTTGCCTGTACAAAGCTCGTGTTATCTGAATTGGAATGCCAGACAGGCTGA
TGAGCTGATTTGTTTACATTTCTCAAGTTGCCAGTAGTTTGCTTGCCTTTTGTAATGCATGAGCGAACGTATTATTGATT
TTTCCAGTTTGGTTCAAACTGAGAAGTNAGCATGTGACTTGCATTGGTGCTGGTGTTTGGTCGGTGGTCACTGGGACTTT
AGACGTGTAATTTTGAGATGTTGAACTAGAATATTTTACAGTAGTAAACAAATATATACTGCAAAGAAACTGAGCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis