Browse Element(s) Details


Os.9094.1.S2_s_at

Description gb:AK102128.1
DB_XREF= gi:32987337
TID=Os.9094.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084P16, full insert sequence.
FL= gb:AK067983.1 gb:AK102128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0193011/11expressed protein
LOC_Os02g0179011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01860OsAffx.31566.2.S1_x_at11/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.31566.2.S1_at9/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.17654.3.S1_x_at1/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01870Os.9094.1.S1_at1/112+482342..483900expressed protein
LOC_Os02g01880Os.38764.1.S1_x_at8/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880OsAffx.24051.1.S1_x_at4/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.45173.1.S1_x_at3/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.10731.1.A1_a_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.48015.1.A1_x_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.17297.1.S1_at1/112+484667..487862Sec63 domain containing protein
LOC_Os02g01890Os.53775.1.S1_at10/112+488913..490588Cytochrome P450 family protein, expressed
LOC_Os02g01900NANA2+491452..492594hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_at11/112+495570..496075hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_x_at11/112+495570..496075hypothetical protein
LOC_Os02g01920Os.10543.1.S1_at11/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01920OsAffx.2480.1.S1_at5/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01930Os.50322.1.S1_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.9094.1.S2_s_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.50322.1.S2_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.56070.1.S1_x_at1/112+500341..504146expressed protein
LOC_Os02g01940OsAffx.11862.1.S1_at11/112+509377..517148jmjC domain containing protein
LOC_Os02g01950OsAffx.24056.1.S1_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01950OsAffx.24056.1.S1_x_at11/112+518032..522644transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9094.1.S2_s_at--1029--6472Chr02:502035..502059 (25 bp)
GATACTAGTATACCTTTGCTTGATG
LOC_Os02g01930
Os.9094.1.S2_s_at--476--1072Chr02:502003..502027 (25 bp)
AGGGTTGACTCAAATCGGGCTGCAC
LOC_Os02g01930
Os.9094.1.S2_s_at--864--2252Chr02:501992..502016 (25 bp)
AAATCGGGCTGCACCTAACTCTTGA
LOC_Os02g01930
Os.9094.1.S2_s_at--187--5092Chr02:501982..502006 (25 bp)
GCACCTAACTCTTGACAGCCAGAGG
LOC_Os02g01930
Os.9094.1.S2_s_at--785--7992Chr02:501959..501983 (25 bp)
GGATGGTGCTGACCAAAGATTTCAA
LOC_Os02g01930
Os.9094.1.S2_s_at--610--3892Chr02:501878..501902 (25 bp)
CTGTGAGACCTTGGCACTTTGTCAA
LOC_Os02g01930
Os.9094.1.S2_s_at--865--52Chr02:501854..501878 (25 bp)
ATTGACAATTGTCACCGCTTCACTG
LOC_Os02g01930
Os.9094.1.S2_s_at--87--4912Chr02:501838..501862 (25 bp)
GCTTCACTGCACAACTGTATCAGCT
LOC_Os02g01930
Os.9094.1.S2_s_at--960--6892Chr02:501822..501846 (25 bp)
GTATCAGCTGTATGTACTCCTAGTT
LOC_Os02g01930
Os.9094.1.S2_s_at--742--5172Chr02:501720..501744 (25 bp)
GCAATCCTGAAGCTGTACTACTGTC
LOC_Os02g01930
Os.9094.1.S2_s_at--360--9772Chr02:501686..501710 (25 bp)
TAATCCATCATTATATCCTTTCTGG
LOC_Os02g01930
Target Sequence 
GATACTAGTATACCTTTGCTTGATGCAATCAAAGGGTTGACTCAAATCGGGCTGCACCTAACTCTTGACAGCCAGAGGAT
GGTGCTGACCAAAGATTTCAATGGGCAGAGATGTGCAGGCCATCAAGGGGGCAGCAGGCAGCTGAGCTGGGGATTAGCTG
TGAGACCTTGGCACTTTGTCAATTGACAATTGTCACCGCTTCACTGCACAACTGTATCAGCTGTATGTACTCCTAGTTCA
ACTAATTTGTCCTGGACCCCATGGATGGTAGTAAGATGATGGGCCTGTTCACTTTGATGTCAAAAAAAACCTTAATAAGG
TCAAAATTTTAGCAAATTTTGGTAAATTTTGGCATGATTTCTTATATAGTTACCAAAATTTAGCAGGAAACTAAATGTAG
CCACTTTTTTGGTAACTTTACCAAAATTTGGTAAGTTTGAAAATGGCATCAAAGTGAACATGCCCGATACTACTACTACT
AGTATTTTGTGACTAATCTTGCAGCAATCCTGAAGCTGTACTACTGTCTGTGAATATTCTAATCCATCATTATATCCTTT
CTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9094.1.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis