Browse Element(s) Details


Os.9507.1.S1_at

Description gb:AK121157.1
DB_XREF= gi:37990780
TID=Os.9507.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full insert sequence.
FL= gb:AK121157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4885011/11Valyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48810Os.9396.1.S1_at11/113+27761365..27764926permease 1, putative, expressed
LOC_Os03g48820OsAffx.13415.1.S1_at11/113+27765109..27766344hypothetical protein
LOC_Os03g48830Os.56044.1.S1_at11/113+27769185..27772095expressed protein
LOC_Os03g48840Os.10994.1.S1_at11/113+27772221..27774889ribosomal protein L18 family protein, putative, expressed
LOC_Os03g48850Os.9507.1.S2_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48850Os.9507.1.S1_at11/113+27776040..27784335Valyl-tRNA synthetase, putative, expressed
LOC_Os03g48870OsAffx.13416.1.S1_at11/113+27785552..27786497expressed protein
LOC_Os03g48880OsAffx.25629.1.S1_at11/113+27787590..27789116Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.8934.1.S1_x_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48890OsAffx.26563.1.S1_at1/113+27792803..27795078Leucine Rich Repeat family protein
LOC_Os03g48904Os.50733.1.A1_x_at10/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52946.1.S1_at8/113+27796146..27802647expressed protein
LOC_Os03g48904OsAffx.13417.1.S1_x_at6/113+27796146..27802647expressed protein
LOC_Os03g48904Os.52635.1.S2_at1/113+27796146..27802647expressed protein
LOC_Os03g48920Os.27770.1.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48920Os.27770.3.A1_a_at11/113+27803974..27807677expressed protein
LOC_Os03g48930Os.9323.1.S1_at11/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed
LOC_Os03g48930OsAffx.24763.1.S1_at1/113+27807867..27810251Proteasome subunit beta type 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9507.1.S1_at--498--6211Chr03:27782633..27782657 (25 bp)
GAGGCCAAGAGATTACTGCCACCAT
LOC_Os03g48850
Os.9507.1.S1_at--24--9911Chr03:27782646..27782670 (25 bp)
TACTGCCACCATTCAGTGTTATCAG
LOC_Os03g48850
Os.9507.1.S1_at--171--9551Chr03:27782673..27782697 (25 bp)
TCTAGTTGTGTCTCTTTCTTCCACA
LOC_Os03g48850
Os.9507.1.S1_at--1155--6491Chr03:27782989..27783013 (25 bp)
GATTTGTCTGTATACCTTCAACTCC
LOC_Os03g48850
Os.9507.1.S1_at--121--131Chr03:27783070..27783199 (25 bp)
ATTCAAAAGCTCCAACACGCACTGT
LOC_Os03g48850
Os.9507.1.S1_at--832--8211Chr03:27783337..27783361 (25 bp)
GGCAATAATTGACCCAGAAATCTCT
LOC_Os03g48850
Os.9507.1.S1_at--520--651Chr03:27783377..27783401 (25 bp)
ATGCACATTTGTTGAAGTTTATCTC
LOC_Os03g48850
Os.9507.1.S1_at--996--4991Chr03:27783411..27783435 (25 bp)
GCATGGTTACCTTAATCATACCTGA
LOC_Os03g48850
Os.9507.1.S1_at--991--1731Chr03:27783419..27783443 (25 bp)
ACCTTAATCATACCTGAATGCCCAG
LOC_Os03g48850
Os.9507.1.S1_at--77--5271Chr03:27783434..27783458 (25 bp)
GAATGCCCAGGTACTCATTTTTATA
LOC_Os03g48850
Os.9507.1.S1_at--644--8551Chr03:27783507..27783531 (25 bp)
TGGTTGTCCAATCTTCCGTTTGAAA
LOC_Os03g48850
Target Sequence 
GAGGCCAAGAGATTACTGCCACCATTCAGTGTTATCAGTCTCTAGTTGTGTCTCTTTCTTCCACATCATCTCTAAAGATC
CTGACAGAGAATGATGAAACGCCACCTGACTGTGCAACAGCTGTTGTAAACAAAGATTTGTCTGTATACCTTCAACTCCA
AGGAGCTCTCAATGCAGAAGTTGAGCTTGAAAANGCTGAGGAAAAAGAGAGAAGAAATTCAAAAGCTCCAACACGCACTG
TCACAGAAAATGGAAGCTTCTGGTTACAAAGAGAAGGCTCCACAGAATGTCCAGGAGGAGGACATGAGAAAACTCACTAG
TTTTTTTGAACAGCTAGAGATTATCAGTGAAGCTGAAAAGAAGCTAGATGCAAAAACTGGCAATAATTGACCCAGAAATC
TCTGATGTGATTTTGAAGATGCACATTTGTTGAAGTTTATCTCAAATTTTTTGCATGGTTACCTTAATCATACCTGAATG
CCCAGGTACTCATTTTTATATTTTGTAGCTTGAAGAGTATATTCACAGCATTATACTTTTGTAGTTTTTGGTTGTCCAAT
CTTCCGTTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis