Browse Element(s) Details


Os.9790.2.S1_x_at

Description gb:CB965854
DB_XREF= gi:30227962
DB_XREF=NL27_E12
CLONE=NL27_E12
TID=Os.9790.2
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=5
UG=Os.9790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683F02.9 (P0683F02.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6388010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63840Os.38338.1.S1_x_at10/111+37366416..373700603-deoxy-D-manno-octulosonic-acid transferase family protein, expressed
LOC_Os01g63854OsAffx.11717.1.S1_s_at11/111+37370345..37376740expressed protein
LOC_Os01g63854Os.4919.1.S1_at11/111+37370345..37376740expressed protein
LOC_Os01g63870Os.35149.1.S1_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.35149.2.S1_x_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.57399.1.S1_at1/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63880Os.9790.2.S1_x_at10/111+37392500..37395745expressed protein
LOC_Os01g63890Os.3537.1.S1_at11/111+37396270..37398738G10 protein homolog, putative, expressed
LOC_Os01g63900Os.46280.1.A1_at11/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63900Os.20081.1.S1_x_at10/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63910Os.46440.1.A1_s_at11/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63910Os.27347.3.S1_at5/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63920OsAffx.23908.1.S1_at11/111+37420192..37420557hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9790.2.S1_x_at--700--9651Chr01:37393043..37393067 (25 bp)
TCAGAACGCCTTCGTGAGCAACACT
LOC_Os01g63880
Os.9790.2.S1_x_at--778--2451Chr01:37393024..37393048 (25 bp)
AACACTGCTGATCGTGTCACGGTAG
LOC_Os01g63880
Os.9790.2.S1_x_at--640--6291Chr01:37392982..37393006 (25 bp)
GATGATCATGGCTTTTCAACGAGGC
LOC_Os01g63880
Os.9790.2.S1_x_at--371--6231Chr01:37392962..37392986 (25 bp)
GAGGCCATGTTACGATCCACACAGT
LOC_Os01g63880
Os.9790.2.S1_x_at--470--7751Chr01:37392906..37392930 (25 bp)
GGTGTAGCACTCCAAGTTCAGATTT
LOC_Os01g63880
Os.9790.2.S1_x_at--1019--8211Chr01:37392853..37392877 (25 bp)
GGAATTCCCGGACTTGCTGAAGATT
LOC_Os01g63880
Os.9790.2.S1_x_at--606--7611Chr01:37392821..37392845 (25 bp)
GGGAAGGCCCCTTGCAGATGCAGAC
LOC_Os01g63880
Os.9790.2.S1_x_at--619--6331Chr01:37392805..37392829 (25 bp)
GATGCAGACCTGTTCATGCAGCGTG
LOC_Os01g63880
Os.9790.2.S1_x_at--231--4671Chr01:37392785..37392809 (25 bp)
GCGTGGCTGCGATTACACTATTTCT
LOC_Os01g63880
Os.9790.2.S1_x_at--467--9631Chr01:37392663..37392687 (25 bp)
TCATGGCTGCATATCCTTGTGAAGA
LOC_Os01g63880
Os.9790.2.S1_x_at--628--10351NONE
TTTTTGACAATTGGTTCTCCCTCTG
NONE
Target Sequence 
TCAGAACGCCTTCGTGAGCAACACTGCTGATCGTGTCACGGTAGCTCCGTCAGAGATAAGAGATGATCATGGCTTTTCAA
CGAGGCCATGTTACGATCCACACAGTTCTGGGCTGCTGTCTGTGCCTACTTCTGGTAGGTGTAGCACTCCAAGTTCAGAT
TTTACAATAAGGGGAGCTTCTTTCCTCTCCGGAATTCCCGGACTTGCTGAAGATTTCAGGAAGGGAAGGCCCCTTGCAGA
TGCAGACCTGTTCATGCAGCGTGGCTGCGATTACACTATTTCTAATAAGTGGATGCTGTAGCTTGTAACATGCATGAATT
TGTTCTCTTTGCTTTTTTTACTAGCGGAAGGCAGCACTGATAATTGACAAGTAGTATTTNTCATGGCTGCATATCCTTGT
GAAGAAGGCGTTCGATTACTAGGGGAGATAATTTGACCAAGACATGGGAAGTGCGCCNCTTTTTGACAATTGGTTCTCCC
TCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9790.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis