Browse Element(s) Details


Os.9833.1.S1_at

Description gb:AK064388.1
DB_XREF= gi:32974406
TID=Os.9833.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9833 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F06, full insert sequence.
FL= gb:AK099346.1 gb:AK064388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4765011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47580Os.9347.1.S1_at11/1111+28195854..28197103Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47590Os.51920.1.S1_at11/1111+28197991..28199150Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47600Os.32890.1.S1_at11/1111+28200834..28202000Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47620OsAffx.7443.1.S1_at11/1111+28204625..28205116Zinc finger, C2H2 type family protein
LOC_Os11g47630Os.51307.1.S1_at11/1111+28208091..28208934Zinc finger, C2H2 type family protein, expressed
LOC_Os11g47640OsAffx.19426.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640Os.52655.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640OsAffx.14237.1.S1_at1/1111+28211601..28215464expressed protein
LOC_Os11g47650Os.9833.1.S1_at11/1111+28216432..28219984expressed protein
LOC_Os11g47650Os.54085.1.S1_at3/1111+28216432..28219984expressed protein
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein
LOC_Os11g47670Os.55400.2.S1_at11/1111+28223321..28224191Thaumatin family protein, expressed
LOC_Os11g47680OsAffx.19428.1.S1_s_at11/1111+28225195..28225949Thaumatin family protein, expressed
LOC_Os11g47690OsAffx.19429.1.S1_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47690OsAffx.19429.1.S1_x_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47700OsAffx.19430.1.S1_at11/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47700OsAffx.19429.1.S1_x_at1/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed
LOC_Os11g47730Os.8604.1.S1_a_at11/1111+28235028..28236831expressed protein
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9833.1.S1_at--98--8531Chr11:28219400..28219424 (25 bp)
TGGAAATTCCTGCATGGCGAGATGT
LOC_Os11g47650
Os.9833.1.S1_at--652--871Chr11:28219413..28219437 (25 bp)
ATGGCGAGATGTGGCGCCCCGACAA
LOC_Os11g47650
Os.9833.1.S1_at--1023--251Chr11:28219490..28219514 (25 bp)
ATATGCCTTCAGGATGCAACCATCG
LOC_Os11g47650
Os.9833.1.S1_at--919--5151Chr11:28219505..28219529 (25 bp)
GCAACCATCGACGAGGCAGCCATGT
LOC_Os11g47650
Os.9833.1.S1_at--307--1531Chr11:28219557..28219581 (25 bp)
AGCAGGTGTGCCAGTTAGCAGATGA
LOC_Os11g47650
Os.9833.1.S1_at--981--1491Chr11:28219614..28219638 (25 bp)
AGCACTTGGTCAGCAGGTGAGGACA
LOC_Os11g47650
Os.9833.1.S1_at--1087--2551Chr11:28219671..28219695 (25 bp)
AACTGAACCTTCTTAGTCTGCTGCA
LOC_Os11g47650
Os.9833.1.S1_at--1032--5071Chr11:28219693..28219717 (25 bp)
GCAGCCTGCAGCTGAGTCTTTTAGC
LOC_Os11g47650
Os.9833.1.S1_at--1070--2551Chr11:28219818..28219842 (25 bp)
AACTGTAACCGTAGAGCTCTCCAGC
LOC_Os11g47650
Os.9833.1.S1_at--1057--1571Chr11:28219840..28219864 (25 bp)
AGCTCGCCCCTGTGATGTGAATTAC
LOC_Os11g47650
Os.9833.1.S1_at--994--8971Chr11:28219918..28219942 (25 bp)
TGAACTGCGGAAACTATCTATGAAA
LOC_Os11g47650
Target Sequence 
TGGAAATTCCTGCATGGCGAGATGTGGCGCCCCGACAAGCACAGGNTGCCTCGGATAATCCATGTGTGNTGCATGNTGCA
CAACATAATCATATGCCTTCAGGATGCAACCATCGACGAGGCAGCCATGTCGAANGATCANGACGNGAATTACAAGCAGC
AGGTGTGCCAGTTAGCAGATGAGAATGCTGNGAGGGTGAGGGACAAACTGTNTGAGCACTTGGTCAGCAGGTGAGGACAA
GAGAAGAAAGAGGGTGTGGATGTCCCGAAGAAACTGAACCTTCTTAGTCTGCTGCAGCCTGCAGCTGAGTCTTTTAGCTG
TGAGTTTCAGTTTTGATGAGTTTGTTTATTTCTTTTAGGGGAGAAAGGGGTAGTGCTAAACTGCTAATTAGTCAGTCAGT
TGTGACAAATGAAAACCCAACTGTAACCGTAGAGCTCTCCAGCTCGCCCCTGTGATGTGAATTACATTTGATTACTTTGG
TTCTGAATGAAAAATATCATACAGATCAAAGCTAAAGTTGAACTGCGGAAACTATCTATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis