Browse Element(s) Details

OsAffx.10341.1.S1_x_at

Description

gb:NM_185645.1
DB_XREF= gi:34898375
TID=OsAffx.10341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07000	4/11	F-box domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06940	OsAffx.27482.1.S1_at	11/11	6	+	3293198..3295173	S-locus-like receptor protein kinase, putative
LOC_Os06g06950	OsAffx.4746.1.S1_x_at	11/11	6	+	3300365..3302146	hypothetical protein
LOC_Os06g06950	OsAffx.4746.1.S1_at	11/11	6	+	3300365..3302146	hypothetical protein
LOC_Os06g06950	OsAffx.22457.1.A1_x_at	1/11	6	+	3300365..3302146	hypothetical protein
LOC_Os06g06960	OsAffx.27482.2.S1_s_at	11/11	6	+	3304185..3306862	D-mannose binding lectin family protein, expressed
LOC_Os06g06970	Os.50638.1.S1_at	11/11	6	+	3309867..3310810	AP2 domain containing protein, expressed
LOC_Os06g06970	OsAffx.4747.1.S1_s_at	11/11	6	+	3309867..3310810	AP2 domain containing protein, expressed
LOC_Os06g06980	Os.4198.1.S1_at	11/11	6	+	3313113..3314453	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06980	Os.4198.1.S1_x_at	11/11	6	+	3313113..3314453	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os06g06990	OsAffx.27483.1.S1_at	11/11	6	+	3316032..3316379	hypothetical protein
LOC_Os06g07000	Os.25299.1.S1_x_at	11/11	6	+	3318113..3321611	F-box domain containing protein, expressed
LOC_Os06g07000	OsAffx.10341.1.S1_x_at	4/11	6	+	3318113..3321611	F-box domain containing protein, expressed
LOC_Os06g07010	Os.25299.3.A1_at	11/11	6	+	3321910..3326627	transposon protein, putative, unclassified, expressed
LOC_Os06g07020	Os.23613.1.S1_at	10/11	6	+	3327558..3330550	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g07030	Os.38447.1.S1_s_at	11/11	6	+	3336100..3337157	AP2 domain containing protein, expressed
LOC_Os06g07030	Os.4804.1.S1_at	11/11	6	+	3336100..3337157	AP2 domain containing protein, expressed
LOC_Os06g07040	Os.15798.1.S1_at	11/11	6	+	3341465..3345319	AUX/IAA family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolism
GO:0009723	biological_process	response to ethylene stimulus
GO:0010105	biological_process	negative regulation of ethylene mediated signaling pathway
GO:0005634	cellular_component	nucleus
GO:0004842	molecular_function	ubiquitin-protein ligase activity
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.10341.1.S1_x_at--1070--425	1	Chr06:3318531..3318555 (25 bp)	CCGGAGGCTGGAGTGCATCAACGTC	LOC_Os06g07000
OsAffx.10341.1.S1_x_at--1047--39	1	Chr06:3318461..3318485 (25 bp)	ATCAGACCGGCGCTGCAGATCAGGT	LOC_Os06g07000
OsAffx.10341.1.S1_x_at--360--905	1	Chr06:3318448..3318472 (25 bp)	TGCAGATCAGGTCCATCCCTCAGAT	LOC_Os06g07000
OsAffx.10341.1.S1_x_at--376--965	1	Chr06:3318429..3318453 (25 bp)	TCAGATCCTCAATGCCAACGTCCAG	LOC_Os06g07000
OsAffx.10341.1.S1_x_at--265--303	1	NONE	AATGCCAACGTCCAGCCGCAGGGCG	NONE
OsAffx.10341.1.S1_x_at--665--995	2	Chr09:8210656..8210680 (25 bp)	TACCGCGACGGTACCGCACATTGGG	NONE
OsAffx.10341.1.S1_x_at--165--783	2	Chr09:8210686..8210710 (25 bp)	GGTACCGAGGCGCACGCGCATAACT	NONE
OsAffx.10341.1.S1_x_at--920--509	2	Chr09:8210697..8210721 (25 bp)	GCACGCGCATAACTGCCGTGCGGCA	NONE
OsAffx.10341.1.S1_x_at--972--197	2	Chr09:8210815..8210839 (25 bp)	ACTCGGTCCCGCACGTTGGGTGTGC	NONE
OsAffx.10341.1.S1_x_at--30--731	2	Chr09:8210836..8210860 (25 bp)	GTGCGGCACCGTTGCAGTCCCAGAA	NONE
OsAffx.10341.1.S1_x_at--737--911	1	Chr06:3316879..3316903 (25 bp)	TGCGGAACCGTAGCGGTCGCGCACA	NONE

Target Sequence

CCGGAGGCTGGAGTGCATCAACGTCGGCGGGATGAGGGTGCCGCCGGAGAGCTTCGCCGGACTTCTCGCCATCAGACCGG
CGCTGCAGATCAGGTCCATCCCTCAGATCCTCAATGCCAACGTCCAGCCGCAGGGCGGGGCAGCGGGAGCGAAGCGCAAC
CGCGGATTGGCGGCGCGGGACCGATCCCGGAGCGGTGGCGCACGCTGGAGAAGCGGTACCGCGACGGTACCGCACATTGG
GCGTGCGGTACCGAGGCGCACGCGCATAACTGCCGTGCGGCACCGGGGTGGATTGCGGGACCGGGCGTGCGCCACCGGCG
GATTGCGGGACCGGCCGTGCGGCACCGCGGTGGACTGCGGGACTGGCCGGGGGAAACTCGGTCCCGCACGTTGGGTGTGC
GGCACCGTTGCAGTCCCAGAACAGGGGGCGGTCGCGCGCGCAGGTTCTGCGGAACCGTGGCGGTCGCGCGCGCTGGTTCT
GCGGAACCGTAGCGGTCGCGCACA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis