Browse Element(s) Details


OsAffx.10400.1.S1_at

Description gb:NM_185207.1
DB_XREF= gi:34897499
TID=OsAffx.10400.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0043P23.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6297411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62910Os.23707.1.S1_at11/113+35528696..35535002expressed protein
LOC_Os03g62910Os.23707.2.S1_at4/113+35528696..35535002expressed protein
LOC_Os03g62920OsAffx.25802.1.S1_at11/113+35539574..35540016hypothetical protein
LOC_Os03g62950Os.37320.2.S1_x_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.1.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62950Os.37320.2.S1_at11/113+35545465..35546799expressed protein
LOC_Os03g62974OsAffx.10400.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_x_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.10400.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.25805.1.S1_at11/113+35554321..35558940hypothetical protein
LOC_Os03g62974Os.32503.1.S1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g62974OsAffx.29203.3.A1_x_at2/113+35554321..35558940hypothetical protein
LOC_Os03g63000Os.20602.2.S1_x_at11/113+35561027..35563200hAT family dimerisation domain containing protein
LOC_Os03g63010Os.25587.2.S1_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.25587.3.S1_x_at10/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63010Os.19042.1.S1_at3/113+35564574..35568552Immutans protein, putative, expressed
LOC_Os03g63020Os.8119.1.S1_at11/113+35572600..35577646Serine/threonine-protein kinase MHK, putative, expressed
LOC_Os03g63030Os.35344.18.S1_x_at11/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030Os.35344.3.S1_x_at9/113+35579471..35583282transposon protein, putative, Mutator sub-class
LOC_Os03g63030OsAffx.22940.5.S1_x_at3/113+35579471..35583282transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10400.1.S1_at--982--1211Chr03:35554799..35554823 (25 bp)
AGTTACAGATGCAGGTGCAAATGGC
LOC_Os03g62974
OsAffx.10400.1.S1_at--373--9871Chr03:35554796..35554820 (25 bp)
TACAGATGCAGGTGCAAATGGCGGT
LOC_Os03g62974
OsAffx.10400.1.S1_at--57--7951Chr03:35554381..35554772 (25 bp)
GGATATCAAGCAGGTGTTCGATAAA
LOC_Os03g62974
OsAffx.10400.1.S1_at--97--3231Chr03:35554375..35554766 (25 bp)
CAAGCAGGTGTTCGATAAAATGGTC
LOC_Os03g62974
OsAffx.10400.1.S1_at--672--4751Chr03:35554372..35554394 (23 bp)
GCAGGTGTTCGATAAAATGGTCAGC
LOC_Os03g62974
OsAffx.10400.1.S1_at--1048--1031Chr03:35554370..35554394 (25 bp)
AGGTGTTCGATAAAATGGTCAGCCC
LOC_Os03g62974
OsAffx.10400.1.S1_at--661--7411Chr03:35554368..35554392 (25 bp)
GTGTTCGATAAAATGGTCAGCCCGA
LOC_Os03g62974
OsAffx.10400.1.S1_at--758--6711Chr03:35554366..35554390 (25 bp)
GTTCGATAAAATGGTCAGCCCGACA
LOC_Os03g62974
OsAffx.10400.1.S1_at--939--9371Chr03:35554364..35554388 (25 bp)
TCGATAAAATGGTCAGCCCGACAAC
LOC_Os03g62974
OsAffx.10400.1.S1_at--809--5971Chr03:35554362..35554386 (25 bp)
GATAAAATGGTCAGCCCGACAACAG
LOC_Os03g62974
OsAffx.10400.1.S1_at--512--331Chr03:35554361..35554385 (25 bp)
ATAAAATGGTCAGCCCGACAACAGC
LOC_Os03g62974
Target Sequence 
AGTTACAGATGCAGGTGCAAATGGCGGTGGCAAGGTGCAATCTCTTCTCCAGGATATCAAGCAGGTGTTCGATAAAATGG
TCAGCCCGACAACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis