Browse Element(s) Details


OsAffx.10439.1.S1_at

Description gb:NM_184900.1
DB_XREF= gi:34896889
GEN=OSJNBa0070N04.12
TID=OsAffx.10439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative transposon protein (OSJNBa0070N04.12), mRNA.
PROD=putative transposon protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5636011/11transposon protein, putative, Mutator sub-class
LOC_Os07g178403/11hypothetical protein
LOC_Os12g281191/11transposon protein, putative, Mutator sub-class
LOC_Os12g238801/11transposon protein, putative, Mutator sub-class
LOC_Os12g281591/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56300Os.11902.1.S1_at10/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56300OsAffx.27834.1.S1_at1/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56310Os.5651.1.S1_a_at11/113+32035791..32042937HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os03g56320Os.19413.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56320Os.56243.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56330Os.11226.1.S1_at11/113+32052198..32052801expressed protein
LOC_Os03g56340OsAffx.25733.1.S1_at11/113+32053048..32054068hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_x_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56360OsAffx.10439.1.S1_at11/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56360Os.46514.1.S1_at1/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56370Os.12046.1.S1_at11/113+32075835..32078449methyltransferase, putative, TIGR00027 family protein, expressed
LOC_Os03g56380Os.5746.1.S1_at11/113+32081109..32085607methyltransferase family protein, expressed
LOC_Os03g56390Os.33461.2.S1_x_at11/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56390Os.33461.1.S1_at8/113+32086154..32089571radical S-adenosyl methionine and flavodoxin domains 1, isoform 1, putative, expressed
LOC_Os03g56400Os.31426.1.S1_at11/113+32089763..32092323pentatricopeptide, putative, expressed
LOC_Os03g56410Os.45029.1.S1_at10/113+32092866..32096290expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10439.1.S1_at--621--8631Chr03:32060011..32060035 (25 bp)
TGGGTGGCAAGCAAGGCAGTTCCTC
LOC_Os03g56360
OsAffx.10439.1.S1_at--948--2931Chr03:32059999..32060023 (25 bp)
AAGGCAGTTCCTCTTCTGAGAAAGA
LOC_Os03g56360
OsAffx.10439.1.S1_at--696--6651Chr03:32059873..32059897 (25 bp)
GTTGAGCTATATGGGACCTGTGAAG
LOC_Os03g56360
OsAffx.10439.1.S1_at--206--1331Chr03:32059817..32059841 (25 bp)
AGAGGTTCTAAGAACTTCACCAGGG
LOC_Os03g56360
OsAffx.10439.1.S1_at--828--8871Chr03:32059379..32059403 (25 bp)
TGATGTGCACTCACACATGTACCCA
LOC_Os03g56360
OsAffx.10439.1.S1_at--468--3232Chr07:10546724..10546747 (24 bp)
CAAGCTTGCAGTGATGTGCTTCCTT
LOC_Os07g17840
OsAffx.10439.1.S1_at--1055--772Chr07:10546711..10546735 (25 bp)
ATGTGCTTCCTTGGCTTGAAACCTA
LOC_Os07g17840
OsAffx.10439.1.S1_at--513--8293Chr12:13575294..13575318 (25 bp)
GGCTTGAAACCTATCATCCATTGAA
LOC_Os12g23880
OsAffx.10439.1.S1_at--585--1093Chr12:16627775..16627799 (25 bp)
AGTGGTTTCAATCCAGCAATAAAGT
LOC_Os12g28159
OsAffx.10439.1.S1_at--605--10051Chr03:32058852..32058876 (25 bp)
TAGTCCCAAAAGACCAGCTGTGCAG
LOC_Os03g56360
OsAffx.10439.1.S1_at--319--2771Chr03:32058843..32058867 (25 bp)
AAGACCAGCTGTGCAGACAATACTG
LOC_Os03g56360
Target Sequence 
TGGGTGGCAAGCAAGGCAGTTCCTCTTCTGAGAAAGAATCCAGGTAGAGAAAAGGCTATGGTTGAGCTATATGGGACCTG
TGAAGAAAGTTTTCATATGCTTTATAGATGGAGAGCAGAGGTTCTAAGAACTTCACCAGGGAGTGTGATAGAGATAGATA
CTGTGGAGAGAGAATGCTTCTGGCATTTGATGAAGAACTTTGTGAAGAGATTTGGTGGTGATGTGCACTCACACATGTAC
CCAGCAGCAAGGGCATACAGGGTAGAGATTTGGCAAAGGCACATGAAAGAAGTTATTCAAGCTTGCAGTGATGTGCTTCC
TTGGCTTGAAACCTATCATCCATTGAAGTGGATGAGGAGTGGTTTCAATCCAGCAATAAAGTGTGATTACATTACTAACA
ATCTTGCAGAGAGTTTCAACAATTGGATCAAGGATTACAAGGCATCAAAAGTTGGAAGAGGAAGCCAAGGAGGAACACTA
CCAAATATGGGAATACTTCAGAAATTCCTAGTCCCAAAAGACCAGCTGTGCAGACAATACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis