Browse Element(s) Details


OsAffx.11215.2.S1_x_at

Description tigr:9629.m02557
TID=OsAffx.11215.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2632010/11hypothetical protein
LOC_Os01g268047/11ZmEBE-1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26280Os.7017.1.S1_at11/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26280Os.33851.3.A1_x_at1/111+14879166..14881659wall-associated kinase 3, putative, expressed
LOC_Os01g26290OsAffx.2092.1.S1_at10/111+14883655..14885689hypothetical protein
LOC_Os01g26290Os.23612.1.S1_at6/111+14883655..14885689hypothetical protein
LOC_Os01g26300OsAffx.23406.1.S1_at11/111+14886366..14887902wall-associated kinase 1, putative, expressed
LOC_Os01g26310OsAffx.21092.2.S1_at11/111+14897300..14898229expressed protein
LOC_Os01g26310OsAffx.21092.1.S1_s_at11/111+14897300..14898229expressed protein
LOC_Os01g26320OsAffx.11215.2.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.1.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.2.S1_x_at10/111+14905597..14910341hypothetical protein
LOC_Os01g26330NANA1+14918190..14918714retrotransposon protein, putative, unclassified
LOC_Os01g26340OsAffx.2093.1.S1_at11/111+14924827..14925934Dirigent-like protein
LOC_Os01g26350OsAffx.23407.1.S1_at11/111+14930057..14931077hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11215.2.S1_x_at--713--132Chr01:15126814..15126838 (25 bp)
ATTACTACGGGCTACGTGCGACGAT
LOC_Os01g26804
OsAffx.11215.2.S1_x_at--24--6151Chr01:14908882..14908906 (25 bp)
GAGGTGCACTTTGGGTCAGTCATTT
LOC_Os01g26320
OsAffx.11215.2.S1_x_at--307--231NONE
ATATTGATCCTGAACGCTATGGCGA
NONE
OsAffx.11215.2.S1_x_at--19--3652Chr01:15127146..15127332 (25 bp)
CTTCCTGGACGGTTTTGAACGAGCA
LOC_Os01g26804
OsAffx.11215.2.S1_x_at--243--7332Chr01:15127355..15127379 (25 bp)
GTGCTTCTATTGACCCAGTTTCAGA
LOC_Os01g26804
OsAffx.11215.2.S1_x_at--474--7431Chr01:14910072..14910096 (25 bp)
GTGTACTATGGCTTCAACGGTGTTC
LOC_Os01g26320
OsAffx.11215.2.S1_x_at--603--7712Chr01:15128112..15128136 (25 bp)
GGTGGGCTCTTACCCAAAATCTCTG
LOC_Os01g26804
OsAffx.11215.2.S1_x_at--1093--2432Chr01:15128127..15128151 (25 bp)
AAAATCTCTGTTCACTAATATGGCA
LOC_Os01g26804
OsAffx.11215.2.S1_x_at--341--5272Chr01:15128160..15128184 (25 bp)
GAATGCTATCGCGTTTGGTGGCTAT
LOC_Os01g26804
OsAffx.11215.2.S1_x_at--136--8632Chr01:15128175..15128199 (25 bp)
TGGTGGCTATGTGGTTACTCGACGA
LOC_Os01g26804
OsAffx.11215.2.S1_x_at--908--351Chr01:14910238..14910262 (25 bp)
ATAAGAGCCGTGCTGCATCACTGAC
LOC_Os01g26320
Target Sequence 
ATTACTACGGGCTACGTGCGACGATGGATGTGTATGGTCATGAACTAAAACCCGGTCAGCTGAGTGGAGGTGCACTTTGG
GTCAGTCATTTCGGTGACGATGGCAAACTATCAAGCTATAATGCAGTTGGCGCTGGTTGGCATATTGATCCTGAACGCTA
TGGCGACTCTCGTCCTCACTTTTATACTTCCTGGACGGTTTTGAACGAGCAAACGGTGCTGCGGTTGCACCAGGTGCTTC
TATTGACCCAGTTTCAGATGACAAAAGCCTACAGAGTATTACAGTTGAAGTGCTGTTGGACAGGGACAAGTGGAGATTGG
TGGGTGTACTATGGCTTCAACGGTGTTCCCACGGGGGTGGGCTCTTACCCAAAATCTCTGTTCACTAATATGGCAGAGAA
GGCGAATGCTATCGCGTTTGGTGGCTATGTGGTTACTCGACGAGCACTGCCTACTCCACCAATGGGAAGCGGGTCTCACC
CACATACTAATAAGAGCCGTGCTGCATCACTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11215.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis