Browse Element(s) Details


OsAffx.11504.1.S1_at

Description tigr:9629.m04540
TID=OsAffx.11504.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GATA zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4736011/11GATA zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein
LOC_Os01g47400Os.10006.2.S1_x_at11/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47400Os.10006.1.S1_at10/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009735biological_processresponse to cytokinin stimulus
GO:0010255biological_processglucose mediated signaling
GO:0051171biological_processregulation of nitrogen metabolism
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11504.1.S1_at--494--7911Chr01:27383432..27383456 (25 bp)
GGTTGCCGTGGGATCAGTCGTCTTT
LOC_Os01g47360
OsAffx.11504.1.S1_at--91--4231Chr01:27383427..27383451 (25 bp)
CCGTGGGATCAGTCGTCTTTGCAGC
LOC_Os01g47360
OsAffx.11504.1.S1_at--296--7151Chr01:27383413..27383437 (25 bp)
GTCTTTGCAGCCCAGCTGCAACGGG
LOC_Os01g47360
OsAffx.11504.1.S1_at--793--4671Chr01:27383269..27383293 (25 bp)
GCGGAACGGCCCACGCGGACCAAAG
LOC_Os01g47360
OsAffx.11504.1.S1_at--339--4151Chr01:27383072..27383096 (25 bp)
CGCGTGTGGCATCCGGTACAAGAAA
LOC_Os01g47360
OsAffx.11504.1.S1_at--518--8651Chr01:27383068..27383092 (25 bp)
TGTGGCATCCGGTACAAGAAAGAGG
LOC_Os01g47360
OsAffx.11504.1.S1_at--1150--9931Chr01:27382981..27383005 (25 bp)
TACGCGTACGGGTACCCGCGGCAGC
LOC_Os01g47360
OsAffx.11504.1.S1_at--135--4651Chr01:27382915..27382939 (25 bp)
GCGTCCTTCGGCATGTTCGGTGACG
LOC_Os01g47360
OsAffx.11504.1.S1_at--650--9231Chr01:27382912..27382936 (25 bp)
TCCTTCGGCATGTTCGGTGACGCGG
LOC_Os01g47360
OsAffx.11504.1.S1_at--1097--4971Chr01:27382905..27382929 (25 bp)
GCATGTTCGGTGACGCGGCGGGCGA
LOC_Os01g47360
OsAffx.11504.1.S1_at--676--4051Chr01:27382883..27382907 (25 bp)
CGAGGACGGGCCGTGCCTGCCGTGG
LOC_Os01g47360
Target Sequence 
GGTTGCCGTGGGATCAGTCGTCTTTGCAGCCCAGCTGCAACGGGCGGCAGGAGATGAGCGGCGCCGCGGCGCCGCGCACG
GAGCCCAGCGGTGGCGCGGGCGCCGCCGCCGCGTCGGCTCCTCGCCGCTGCGCCAACTGCGACACGACCTCCACGCCGCT
CTGGCGGAACGGCCCACGCGGACCAAAGTCGCTGTGCAACGCGTGTGGCATCCGGTACAAGAAAGAGGAGAGGCGCGCCG
CCGCGGCGGCCGTGGCGCCGACGGCGCTGGCGTCGGACGGCGGGGTGGAGTACGCGTACGGGTACCCGCGGCAGCAGCAG
CAGTGGGGATGCTATGGGCCGGCCGTGGCAAAGGCGGCGTCCTTCGGCATGTTCGGTGACGCGGCGGGCGAGGACGGGCC
GTGCCTGCCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis