Browse Element(s) Details


OsAffx.11788.1.S1_at

Description tigr:9629.m06800
TID=OsAffx.11788.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6846011/11DC1 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68410OsAffx.22848.3.S1_x_at3/111+40077743..40083688retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g68420OsAffx.11787.2.S1_at7/111+40089745..40090563hypothetical protein
LOC_Os01g68430Os.14919.1.S1_at4/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68430Os.56216.1.S1_at2/111+40093168..40097840transposon protein, putative, Mutator sub-class
LOC_Os01g68440Os.36529.1.S1_at11/111+40099940..40103634expressed protein
LOC_Os01g68450Os.23056.2.S1_x_at11/111+40104637..40106746expressed protein
LOC_Os01g68450Os.23056.1.S1_at11/111+40104637..40106746expressed protein
LOC_Os01g68460OsAffx.11788.1.S1_at11/111+40107632..40110194DC1 domain-containing protein, putative, expressed
LOC_Os01g68470OsAffx.11789.1.S1_s_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.2.S1_at11/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.11789.1.S1_at5/111+40116502..40118073hypothetical protein
LOC_Os01g68470OsAffx.16999.1.S1_at1/111+40116502..40118073hypothetical protein
LOC_Os01g68490Os.9880.3.S1_at11/111+40121088..40126190pentatricopeptide, putative, expressed
LOC_Os01g68480Os.9880.1.S1_a_at11/111+40121360..40122658Thioredoxin F-type 2, chloroplast precursor, putative, expressed
LOC_Os01g68500Os.11035.1.S1_at11/111+40128313..40129336expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11788.1.S1_at--404--10471Chr01:40108124..40108148 (25 bp)
TTACGTGTACTACTGCCCGGACAAG
LOC_Os01g68460
OsAffx.11788.1.S1_at--333--5971Chr01:40107943..40107967 (25 bp)
GAGAAGATGATCCAGCTGCACGTCG
LOC_Os01g68460
OsAffx.11788.1.S1_at--503--8151Chr01:40107909..40107933 (25 bp)
GGAAAGCTCTCGTTTCGCAGTTCGA
LOC_Os01g68460
OsAffx.11788.1.S1_at--31--6111Chr01:40107886..40107910 (25 bp)
GAGTCGAGGCTTTACGGCGTGCAAA
LOC_Os01g68460
OsAffx.11788.1.S1_at--887--1651Chr01:40107820..40107844 (25 bp)
AGCGCTGCTTCTTCAACTAGTAGTT
LOC_Os01g68460
OsAffx.11788.1.S1_at--473--3711Chr01:40107804..40107828 (25 bp)
CTAGTAGTTCGACTGCCATTGTGGA
LOC_Os01g68460
OsAffx.11788.1.S1_at--780--10651Chr01:40107769..40107793 (25 bp)
TTCCCCGTGCTCGAGGTGGATAAGT
LOC_Os01g68460
OsAffx.11788.1.S1_at--746--7891Chr01:40107726..40107750 (25 bp)
GGTTCCTCGATACGTTCAGGCGGAT
LOC_Os01g68460
OsAffx.11788.1.S1_at--255--9631Chr01:40107711..40107735 (25 bp)
TCAGGCGGATCGTCAGGGCAGTCAT
LOC_Os01g68460
OsAffx.11788.1.S1_at--744--871Chr01:40107688..40107712 (25 bp)
ATGGCCATGGTCTCGGCGGTGATCA
LOC_Os01g68460
OsAffx.11788.1.S1_at--157--7391Chr01:40107670..40107694 (25 bp)
GTGATCACCGGGAACCATTTGGAGA
LOC_Os01g68460
Target Sequence 
TTACGTGTACTACTGCCCGGACAAGAAGGTCAGCCTGCACCCTTGCTGCGCAGATCTCCCCCGCGTGATAACCACCGAGA
CGGTGCAGCTGAAACTGGAGAGGAAGATCACCAAGAAATGCGGCATGTGCCACGAGCGGAATCAGGGGAGCTTCAGCAAC
CCATGGGCCTACGCCTCCAGCGAGAAGATGATCCAGCTGCACGTCGCCTGCGTCCGGAAAGCTCTCGTTTCGCAGTTCGA
GTCGAGGCTTTACGGCGTGCAAAAGCCGAAGATGCTGCTGCCGCCGCCGCCTGCTGCTGGAGCAAGCGCTGCTTCTTCAA
CTAGTAGTTCGACTGCCATTGTGGAATGCAACAGCTTCCCCGTGCTCGAGGTGGATAAGTACCGGAGGAAATCGGCCGGG
TTCCTCGATACGTTCAGGCGGATCGTCAGGGCAGTCATGGCCATGGTCTCGGCGGTGATCACCGGGAACCATTTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis