Browse Element(s) Details


OsAffx.1196.1.S1_at

Description gb:NM_189146.1
DB_XREF= gi:34905375
GEN=OJ1126_G08.18
TID=OsAffx.1196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1126_G08.18 (OJ1126_G08.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g087293/11hypothetical protein
LOC_Os11g088893/11hypothetical protein
LOC_Os01g312902/11hypothetical protein
LOC_Os05g282402/11hypothetical protein
LOC_Os02g242302/11Zinc knuckle family protein
LOC_Os12g170402/11transposon protein, putative, unclassified
LOC_Os07g150602/11hypothetical protein
LOC_Os12g199902/11hypothetical protein
LOC_Os11g260102/11hypothetical protein
LOC_Os04g100802/11hypothetical protein
LOC_Os07g223302/11hypothetical protein
LOC_Os01g295072/11hypothetical protein
LOC_Os01g407802/11hypothetical protein
LOC_Os02g246902/11hypothetical protein
LOC_Os05g181802/11hypothetical protein
LOC_Os09g041402/11hypothetical protein
LOC_Os06g274102/11hypothetical protein
LOC_Os09g063002/11hypothetical protein
LOC_Os01g363102/11hypothetical protein
LOC_Os12g335002/11hypothetical protein
LOC_Os06g274302/11hypothetical protein
LOC_Os06g161002/11Zinc knuckle family protein
LOC_Os06g251702/11Transposable element protein, putative, Retrotrans_gag
LOC_Os06g252102/11Zinc knuckle family protein
LOC_Os08g220801/11hypothetical protein
LOC_Os04g138001/11hypothetical protein
LOC_Os06g284501/11retrotransposon protein, putative, unclassified
LOC_Os04g130801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08660Os.51060.2.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08660Os.51060.1.S1_at11/1111+4615654..4619271BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g08670Os.17282.1.S1_at10/1111+4621013..4627105ATP-NAD kinase family protein, expressed
LOC_Os11g08680Os.8169.1.S1_at3/1111+4629965..4630519hypothetical protein
LOC_Os11g08689OsAffx.30486.1.S1_at1/1111+4633832..4635452NA
LOC_Os11g08698OsAffx.18753.1.S1_at11/1111+4636454..4638950hypothetical protein
LOC_Os11g08698OsAffx.19202.1.S1_at1/1111+4636454..4638950hypothetical protein
LOC_Os11g08707Os.9658.1.S1_at11/1111+4639444..4640585expressed protein
LOC_Os11g08707OsAffx.18753.3.S1_x_at1/1111+4639444..4640585expressed protein
LOC_Os11g08720OsAffx.7657.1.S1_x_at1/1111+4642248..4643306hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_at3/1111+4644252..4645409hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_x_at1/1111+4644252..4645409hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_at11/1111+4649403..4649678hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_x_at6/1111+4649403..4649678hypothetical protein
LOC_Os11g08750Os.53818.1.S1_at11/1111+4651264..4653407Pectinesterase family protein, expressed
LOC_Os11g08760Os.9658.1.S1_at5/1111+4654891..4658106Pectinesterase family protein
LOC_Os11g08770OsAffx.25936.7.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.1.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.2.S1_x_at4/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.5.S1_x_at2/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08780NANA11+4664225..4664440hypothetical protein
LOC_Os11g08790Os.19439.2.S1_at11/1111+4665104..4666395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08800OsAffx.17922.1.S1_x_at5/1111+4666677..4668998hypothetical protein
LOC_Os11g08810Os.10827.1.S1_x_at11/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08810Os.46055.2.S1_x_at5/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1196.1.S1_at--874--8431Chr01:17442539..17442674 (25 bp)
GGCCACTAGGCTGCAGTTCCTGGAG
NONE
OsAffx.1196.1.S1_at--104--4371Chr01:17442541..17442676 (25 bp)
CCACTAGGCTGCAGTTCCTGGAGAT
NONE
OsAffx.1196.1.S1_at--590--371Chr01:17442693..17442717 (25 bp)
ATCAAGGGCGTCAATCTCGATGCCG
NONE
OsAffx.1196.1.S1_at--1095--2871Chr01:17442696..17442720 (25 bp)
AAGGGCGTCAATCTCGATGCCGTCA
NONE
OsAffx.1196.1.S1_at--214--2251Chr01:17442847..17442871 (25 bp)
AAATCAATGCCCTGCGTGGACGAAT
NONE
OsAffx.1196.1.S1_at--171--811Chr01:17442914..17442938 (25 bp)
ATGGGAACGACTGCAAGAGTATGGT
NONE
OsAffx.1196.1.S1_at--844--2591Chr01:17442919..17442943 (25 bp)
AACGACTGCAAGAGTATGGTTGGAA
LOC_Os01g31290
OsAffx.1196.1.S1_at--746--8153Chr12:10661953..10661972 (20 bp)
GGAAAACCATAGAGGAATCTCGTGC
NONE
OsAffx.1196.1.S1_at--402--18130Chr12:20207796..20207971 (25 bp)
ACCCGTGCAGATGTCAAGTGGTGTG
LOC_Os12g33500
OsAffx.1196.1.S1_at--92--40134Chr12:20207799..20207974 (25 bp)
CGTGCAGATGTCAAGTGGTGTGCCT
LOC_Os12g33500
OsAffx.1196.1.S1_at--333--6053Chr11:4645338..4645358 (21 bp)
GATAGGGGAAATCCAGTACAACCTC
LOC_Os11g08729
Target Sequence 
GGCCACTAGGCTGCAGTTCCTGGAGATCTGTAGCACGTACACCATCAAGGGCGTCAATCTCGATGCCGTCAGGCTGAGAC
TGTTCCTGTTCTCCCTCCTCGGGAGAGCGAAGCAGTGGTTCTACACCAACCGTGTTGCTGTCAACACCTGGGACAAATGC
TCTACGGCATTCCTCTCAAAATTCTTCCCGATGGGCAAAATCAATGCCCTGCGTGGACGAATTTCAAGTTTCCAGCAAAC
AAGGGACGAGTCCATTCCTGAAGCATGGGAACGACTGCAAGAGTATGGTTGGAAAACCATAGAGGAATCTCGTGCAGGTG
GAACATACAGAGAGACGCGCAACATGACAAGGAATGAACGAGAAAGTTCATCATCCTCGACACCCGTGCAGATGTCAAGT
GGTGTGCCTCCATCTCCAAGTGAATGGCGCTCGAGTTCTTCCCGTTGGGACTTGAGTGAAATCATTAGGAGAATGGACAC
CCTTGATATACAGATAGGGGAAATCCAGTACAACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis