Browse Element(s) Details


OsAffx.12075.1.S1_at

Description tigr:9630.m01563
TID=OsAffx.12075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1675010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16680Os.49514.1.S1_at11/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16680Os.1502.1.S1_at1/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16690OsAffx.2642.1.S1_s_at11/112+9539378..9542538expressed protein
LOC_Os02g16690Os.24736.1.A1_at11/112+9539378..9542538expressed protein
LOC_Os02g16709Os.24631.1.A1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.12074.1.S1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.24631.1.A1_s_at9/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.46219.1.S1_at8/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.28164.2.S1_at1/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16730OsAffx.2643.1.S1_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16730OsAffx.2643.1.S1_x_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16740OsAffx.24282.1.S1_at11/112+9555585..9555815hypothetical protein
LOC_Os02g16750OsAffx.12075.1.S1_at10/112+9559186..9559881hypothetical protein
LOC_Os02g16760OsAffx.24283.1.S1_at11/112+9562675..9563847F-box domain containing protein
LOC_Os02g16770OsAffx.12076.1.S1_at11/112+9565901..9568320hypothetical protein
LOC_Os02g16780OsAffx.24284.4.S1_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16780OsAffx.24284.4.S1_x_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16790NANA2+9571150..9571803hypothetical protein
LOC_Os02g16800OsAffx.24284.3.S1_at11/112+9574545..9575500Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16809OsAffx.24284.5.S1_at11/112+9578456..9579367Rare lipoprotein A like double-psi beta-barrel containing protein
LOC_Os02g16820Os.11372.2.S1_s_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed
LOC_Os02g16820Os.11372.1.S1_a_at11/112+9580487..9582485Glutelin type-B 4 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12075.1.S1_at--822--4431Chr02:9559824..9559848 (25 bp)
GCCATTGACAAGAAGCGTTGCACCT
LOC_Os02g16750
OsAffx.12075.1.S1_at--306--6671Chr02:9559808..9559832 (25 bp)
GTTGCACCTTCTTGTGGACGGGCAC
LOC_Os02g16750
OsAffx.12075.1.S1_at--474--8271Chr02:9559766..9559790 (25 bp)
GGCAGTGCCGAGTGTCTAGAACGAA
LOC_Os02g16750
OsAffx.12075.1.S1_at--979--1431Chr02:9559749..9559773 (25 bp)
AGAACGAATGTCTATCATCCCAAAG
LOC_Os02g16750
OsAffx.12075.1.S1_at--818--7151Chr02:9559740..9559764 (25 bp)
GTCTATCATCCCAAAGCTTTCGGTG
LOC_Os02g16750
OsAffx.12075.1.S1_at--994--7471Chr02:9559718..9559742 (25 bp)
GTGGGTTAGGAATTGCTGACCTCAG
LOC_Os02g16750
OsAffx.12075.1.S1_at--717--1751NONE
ACCTCAGGGTGATGCTTTCGTCGGG
NONE
OsAffx.12075.1.S1_at--468--10292Chr05:4263550..4263811 (25 bp)
TTTCGTCGGGTGTCGGGAATCGTCT
NONE
OsAffx.12075.1.S1_at--601--8211Chr02:9559334..9559358 (25 bp)
GGAATCGTCTTGTCTGGTGTTGGAC
LOC_Os02g16750
OsAffx.12075.1.S1_at--892--8391Chr02:9559291..9559315 (25 bp)
GGCGCGTTCGGTGTACCAGGCATTC
LOC_Os02g16750
OsAffx.12075.1.S1_at--389--7351Chr02:9559221..9559245 (25 bp)
GTGAAGGGCCCTACTAAATACAAAT
LOC_Os02g16750
Target Sequence 
GCCATTGACAAGAAGCGTTGCACCTTCTTGTGGACGGGCACGGACTCGGTTCATGGTGGGCAGTGCCGAGTGTCTAGAAC
GAATGTCTATCATCCCAAAGCTTTCGGTGGGTTAGGAATTGCTGACCTCAGGGTGATGCTTTCGTCGGGTGTCGGGAATC
GTCTTGTCTGGTGTTGGACGAGTGACCAGCACTACTCGGCGCGTTCGGTGTACCAGGCATTCTTCCTTGGCCAGCACTTC
TTTGCTTGTGTCAATCTTCTCTGGCACGTGAAGGGCCCTACTAAATACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis