Browse Element(s) Details


OsAffx.12363.1.S1_at

Description tigr:9630.m03396
TID=OsAffx.12363.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:F2C19.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3566010/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35590Os.6851.2.S1_x_at11/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35590Os.6851.1.S1_at9/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35600Os.140.1.A1_s_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35600Os.49533.1.S1_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35610Os.18440.1.S1_at11/112+21412164..21415259expressed protein
LOC_Os02g35610Os.11016.1.S1_x_at11/112+21412164..21415259expressed protein
LOC_Os02g35620NANA2+21414355..21416497expressed protein
LOC_Os02g35630OsAffx.12697.1.S1_x_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35630Os.21406.1.A1_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35640Os.22460.1.S1_at11/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35640OsAffx.12361.1.S1_at6/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35650OsAffx.12362.1.S1_at11/112+21429533..21429931Late embryogenesis abundant protein
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g35670OsAffx.30226.2.S1_s_at11/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_x_at3/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.442.1.S1_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35670OsAffx.30226.2.S1_x_at1/112+21439167..21439843hypothetical protein
LOC_Os02g35680OsAffx.24587.1.S1_x_at11/112+21440709..21441186hypothetical protein
LOC_Os02g35690Os.18021.1.S1_at11/112+21443732..21445471expressed protein
LOC_Os02g35700Os.5448.1.S1_at11/112+21447255..21450023Nucleoside diphosphate kinase family protein, expressed
LOC_Os02g35710NANA2+21452107..21452475hypothetical protein
LOC_Os02g35720Os.24019.1.S1_at9/112+21456409..21458639Microsomal signal peptidase 25 kDa subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12363.1.S1_at--305--3811Chr02:21431575..21431599 (25 bp)
CTCCGGAGGGAGAAGATCTCTGACA
LOC_Os02g35660
OsAffx.12363.1.S1_at--1113--6311Chr02:21431549..21431573 (25 bp)
GATGAAGGATTTACAGGAGCTTGTC
LOC_Os02g35660
OsAffx.12363.1.S1_at--1103--8271Chr02:21431393..21431417 (25 bp)
GGCATCCATGCTCGATGAGATCATC
LOC_Os02g35660
OsAffx.12363.1.S1_at--976--3531Chr02:21431372..21431396 (25 bp)
CATCGACTATGTGAAATTTCTCCAA
LOC_Os02g35660
OsAffx.12363.1.S1_at--789--3111Chr02:21431358..21431382 (25 bp)
AATTTCTCCAATTACAAGTCAAGGT
LOC_Os02g35660
OsAffx.12363.1.S1_at--1139--9711NONE
TCAAGGTCCTTAGCATGAGCAGGCT
NONE
OsAffx.12363.1.S1_at--96--10871Chr02:21431216..21431240 (25 bp)
TTGGAGCGGCCGAAGCCGTTGTCCC
LOC_Os02g35660
OsAffx.12363.1.S1_at--795--4031Chr02:21431200..21431224 (25 bp)
CGTTGTCCCTCTTCTGACAGAAACA
LOC_Os02g35660
OsAffx.12363.1.S1_at--1044--2131Chr02:21431057..21431208 (25 bp)
ACAGAAACACAAACCGAGAGCCCCG
LOC_Os02g35660
OsAffx.12363.1.S1_at--154--2811Chr02:21431016..21431040 (25 bp)
AAGATCATCATCAGGAGAAAGGCAG
LOC_Os02g35660
OsAffx.12363.1.S1_at--51--1351Chr02:21430719..21430743 (25 bp)
AGAGTTTGACGCACCGAGGAGGCCT
LOC_Os02g35660
Target Sequence 
CTCCGGAGGGAGAAGATCTCTGACAGGATGAAGGATTTACAGGAGCTTGTCCCAAACTCAAACAAGACTAACAAGGCATC
CATGCTCGATGAGATCATCGACTATGTGAAATTTCTCCAATTACAAGTCAAGGTCCTTAGCATGAGCAGGCTTGGAGCGG
CCGAAGCCGTTGTCCCTCTTCTGACAGAAACACAAACCGAGAGCCCCGGGTTTCTCCTGTCCCCAAGATCATCATCAGGA
GAAAGGCAGGCAGGAGCAGGAGCAGTAACAGGAGGGCTCCCCGGCGATCAGCCGGAGCTCCTGGACGGCGGCGCCATGTT
CGAGCAGGAGGTGGTGAAGCTGATGGAGGACAACATGACGACGGCGATGCAGTACCTGCAGAGCAAGGGGCTCTGCCTCA
TGCCGGTGGCGCTGGCGTCGGCGATATCGGCACAGAAGGGGACGTCCTCGGCCGCCGTCCGACCGGAGAAGAAGAAGAAC
GGTGATGGCGATGGCGGCGGCGACGAGGAGGACGTGAAGGGAGAGTTTGACGCACCGAGGAGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis