Browse Element(s) Details


OsAffx.12616.1.S1_at

Description tigr:9630.m05203
TID=OsAffx.12616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to defective chloroplasts and leaves (DCL) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g527443/11DCL protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52700Os.57437.1.S1_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.57437.1.S1_x_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.57438.1.S1_at11/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52700Os.12293.3.S2_x_at3/112+32237297..32239099Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.49249.1.S1_at11/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.12293.3.S2_x_at5/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.12293.3.S2_at3/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52710Os.57437.1.S1_x_at3/112+32242460..32244308Alpha-amylase precursor, putative, expressed
LOC_Os02g52720Os.53710.1.S1_at1/112+32247269..32247932SCP-2 sterol transfer family protein
LOC_Os02g52730Os.12293.4.S1_x_at3/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52730Os.142.2.A1_a_at2/112+32248395..32251488Ferredoxin-nitrite reductase, chloroplast precursor, putative
LOC_Os02g52744Os.5136.1.S1_a_at11/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.1.S1_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.5136.2.S1_x_at10/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744OsAffx.12616.1.S1_at3/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52744Os.50229.1.S1_at1/112+32255725..32261665DCL protein, chloroplast precursor, putative, expressed
LOC_Os02g52760OsAffx.3048.1.S1_at11/112+32263034..32263530hypothetical protein
LOC_Os02g52770Os.9397.1.S1_at11/112+32268002..32269372expressed protein
LOC_Os02g52780Os.11781.1.S1_at11/112+32270776..32275781bZIP transcription factor family protein, expressed
LOC_Os02g52790OsAffx.12617.1.S1_at11/112+32276805..32277407PB1 domain containing protein
LOC_Os02g52800OsAffx.24838.1.S1_at11/112+32278116..32279746beta-mannan endohydrolase, putative, expressed
LOC_Os02g52810Os.27898.1.A1_at11/112+32280722..32286221Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0030880cellular_componentRNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12616.1.S1_at--1134--5071Chr02:32258335..32258354 (20 bp)
GCACCGTCGCCATGACCATGTATAA
LOC_Os02g52744
OsAffx.12616.1.S1_at--647--7111Chr02:32256980..32257004 (25 bp)
GTCAGAAATTGCTTCACCGTATCAA
LOC_Os02g52744
OsAffx.12616.1.S1_at--719--10511Chr02:32256968..32256992 (25 bp)
TTCACCGTATCAACCTTCTTATAGT
LOC_Os02g52744
OsAffx.12616.1.S1_at--1063--2831NONE
AAGTACCCCATGTTCAGAGTCTTGA
NONE
OsAffx.12616.1.S1_at--63--1331Chr02:32254712..32254736 (25 bp)
AGAGTCTTGAGACACACAGTGAGAA
NONE
OsAffx.12616.1.S1_at--863--1111Chr02:32254695..32254719 (25 bp)
AGTGAGAAGCAAGGGCACGCCTCTG
NONE
OsAffx.12616.1.S1_at--860--4451Chr02:32254677..32254701 (25 bp)
GCCTCTGCACTTTGGCGAGCACGAT
NONE
OsAffx.12616.1.S1_at--743--5931Chr02:32254661..32254685 (25 bp)
GAGCACGATCCGACACGAGAGAAAT
NONE
OsAffx.12616.1.S1_at--527--10251Chr02:32254637..32254661 (25 bp)
TTTGGTGAGAAGAACGACATGCGTT
NONE
OsAffx.12616.1.S1_at--644--611Chr02:32254619..32254643 (25 bp)
ATGCGTTACAAGCAGATCCACCCTT
NONE
OsAffx.12616.1.S1_at--742--1851Chr02:32254594..32254618 (25 bp)
ACGACGGCTCATGGGCCGTTTCTCA
NONE
Target Sequence 
GCACCGTCGCCATGACCATGTATAACAAGTCAGAAATTGCTTCACCGTATCAACCTTCTTATAGTATTAGGTATGAAAAT
GGTGATCGACTGAGCCCTGAACATGAAAAGGCAATTTTGGAACGATTGCTTCCTTATCACCCACAATATGAGAAGAAAAT
TGGATGCGGTATTGACTACCTTACGGTAGGGTTACATCCAGAATTTGAGAACTCAAGATGTCTTTTCATAGTTAGGAAGG
ATGGTGAGCAAGTTGATTTTTCATTCTGGAAGTGCATCAAAGGTCTCATACGACAAAAGTACCCCATGTTCAGAGTCTTG
AGACACACAGTGAGAAGCAAGGGCACGCCTCTGCACTTTGGCGAGCACGATCCGACACGAGAGAAATTTGGTGAGAAGAA
CGACATGCGTTACAAGCAGATCCACCCTTACGACGGCTCATGGGCCGTTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis