Browse Element(s) Details


OsAffx.12659.1.S1_at

Description tigr:9630.m05572
TID=OsAffx.12659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kelch motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5616011/11Kelch motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56110Os.49469.1.S1_at11/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56110OsAffx.12658.1.S1_at10/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g56190Os.53634.1.S1_at10/112+34364278..34366180expressed protein
LOC_Os02g56200OsAffx.12660.1.S1_x_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56200Os.5138.1.A1_a_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56210Os.8453.2.S1_at11/112+34372830..34376223Dcp2, box A domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12659.1.S1_at--1114--5751Chr02:34356124..34356148 (25 bp)
GACGTGCCGCCGAACCAGATCGTGG
LOC_Os02g56160
OsAffx.12659.1.S1_at--106--8391Chr02:34356175..34356199 (25 bp)
GGCGACTGCCTCAACAGCTGGAAGG
LOC_Os02g56160
OsAffx.12659.1.S1_at--1054--4071Chr02:34356222..34356246 (25 bp)
CGAGCTCAACATCTGGAGCATCATG
LOC_Os02g56160
OsAffx.12659.1.S1_at--23--8071Chr02:34356236..34356260 (25 bp)
GGAGCATCATGGACCACTCGGCGAT
LOC_Os02g56160
OsAffx.12659.1.S1_at--266--4591Chr02:34356298..34356322 (25 bp)
GCGCAGCGGCGGTACCACACCATGG
LOC_Os02g56160
OsAffx.12659.1.S1_at--500--9391Chr02:34356326..34356350 (25 bp)
TCGTCGGCAATCAGCTCTACTTCCT
LOC_Os02g56160
OsAffx.12659.1.S1_at--1057--9611Chr02:34356389..34356413 (25 bp)
TCAGGACCGTCTCCCTGGTGCACAG
LOC_Os02g56160
OsAffx.12659.1.S1_at--763--8611Chr02:34356404..34356428 (25 bp)
TGGTGCACAGCTTCGACACCAGTGC
LOC_Os02g56160
OsAffx.12659.1.S1_at--142--2171Chr02:34356419..34356443 (25 bp)
ACACCAGTGCAAACCCCGGGCTGAT
LOC_Os02g56160
OsAffx.12659.1.S1_at--471--831Chr02:34356450..34356474 (25 bp)
ATGGAGAAGCTTCCAGCCCACCATG
LOC_Os02g56160
OsAffx.12659.1.S1_at--52--10691Chr02:34356460..34356484 (25 bp)
TTCCAGCCCACCATGGATCAGGATG
LOC_Os02g56160
Target Sequence 
GACGTGCCGCCGAACCAGATCGTGGCGGTGGCCGGCCGGCTGCTCAGCTCCGGCGACTGCCTCAACAGCTGGAAGGGCCA
CGTCGAGGTGTACGACGGCGAGCTCAACATCTGGAGCATCATGGACCACTCGGCGATGCCGGACATGCCGCTGCTCGCCG
CCCTCCCGCCGTCGGCGCAGCGGCGGTACCACACCATGGCCGTCGTCGGCAATCAGCTCTACTTCCTCGCCGGCTACCAG
GTGGCGGCGGGCGGCGACGGCGGCTTCAGGACCGTCTCCCTGGTGCACAGCTTCGACACCAGTGCAAACCCCGGGCTGAT
GCCGCCATGGAGAAGCTTCCAGCCCACCATGGATCAGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis