Browse Element(s) Details


OsAffx.12860.1.S1_at

Description tigr:9631.m01397
TID=OsAffx.12860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1456011/11Cytochrome P450 family protein
LOC_Os07g384401/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14500Os.54824.1.S1_at11/113+7850547..7852429expressed protein
LOC_Os03g14510Os.52924.1.S1_at11/113+7853590..7857478Immature colon carcinoma transcript 1 protein precursor, putative, expressed
LOC_Os03g14520Os.52970.1.S1_at11/113+7860293..7863387Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os03g14530Os.9027.1.S1_at11/113+7863868..786584540S ribosomal protein S20, putative, expressed
LOC_Os03g14540Os.39979.1.A1_at11/113+7868377..7870396NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g14550OsAffx.3242.1.S1_at10/113+7874298..7874936GAST1 protein precursor, putative
LOC_Os03g14560OsAffx.12860.1.S1_at11/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14560Os.46470.2.S1_x_at1/113+7875991..7880726Cytochrome P450 family protein
LOC_Os03g14570Os.12766.1.S1_at11/113+7886105..7886959expressed protein
LOC_Os03g14580Os.12336.1.S1_at11/113+7890746..7893321Rap8, putative, expressed
LOC_Os03g14590Os.27624.1.S1_at11/113+7893606..789730839 kDa EF-Hand containing protein, putative, expressed
LOC_Os03g14600OsAffx.12861.2.S1_x_at11/113+7903995..7907028hAT family dimerisation domain containing protein
LOC_Os03g14600OsAffx.12861.3.S1_x_at9/113+7903995..7907028hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12860.1.S1_at--1142--5831Chr03:7876553..7876577 (25 bp)
GAGCCAGTACGACCTCGGTATTAAT
LOC_Os03g14560
OsAffx.12860.1.S1_at--585--571Chr03:7876437..7876461 (25 bp)
ATCCAAGAATTTGACATCGCCCGGC
LOC_Os03g14560
OsAffx.12860.1.S1_at--925--9311Chr03:7876412..7876436 (25 bp)
TCCCATATCTTCAGGCCGTTGTGAA
LOC_Os03g14560
OsAffx.12860.1.S1_at--694--7332Chr07:23097419..23097444 (24 bp)
GTGAAAGAAACCCTTCGTCTTCGTG
LOC_Os07g38440
OsAffx.12860.1.S1_at--442--1071Chr03:7876319..7876343 (25 bp)
AGGGCTTCACCATTCCTAAAGGCAC
LOC_Os03g14560
OsAffx.12860.1.S1_at--903--8251Chr03:7876299..7876323 (25 bp)
GGCACCAACGTAATTCTGAACTTAT
LOC_Os03g14560
OsAffx.12860.1.S1_at--1079--5471Chr03:7876282..7876306 (25 bp)
GAACTTATGGGCTATCAACCGAGAT
LOC_Os03g14560
OsAffx.12860.1.S1_at--1115--7931Chr03:7876237..7876261 (25 bp)
GGATAAATTCATGCCCGAGAGATTC
LOC_Os03g14560
OsAffx.12860.1.S1_at--891--3571Chr03:7876166..7876190 (25 bp)
CATTTGGTGTTGGACGACGCATTTG
LOC_Os03g14560
OsAffx.12860.1.S1_at--181--4951Chr03:7876087..7876111 (25 bp)
GCATCAGTTTGAATGGACCCTTCCT
LOC_Os03g14560
OsAffx.12860.1.S1_at--740--8511Chr03:7876021..7876045 (25 bp)
TGGAATGGTGCTATGTCTCGCAAAC
LOC_Os03g14560
Target Sequence 
GAGCCAGTACGACCTCGGTATTAATCGAGTGGGCAATAGCAGATCTACTGCAAAATCCAGAGTCAATGCGAAAGATAAAG
GAGGAGATCACAAATGTCATTGGCACGAATGCACAGATCCAAGAATTTGACATCGCCCGGCTCCCATATCTTCAGGCCGT
TGTGAAAGAAACCCTTCGTCTTCGTGCTGTTGCGCCATTGGTGCCTCGCAGAGCCGAGGCAACGATAGAGGTCCAGGGCT
TCACCATTCCTAAAGGCACCAACGTAATTCTGAACTTATGGGCTATCAACCGAGATGCTAGGGCATGGAATGACCCGGAT
AAATTCATGCCCGAGAGATTCATCGGCAATGACATCAATTATCTGGGACAAAATTTTCAGTTTGTTCCATTTGGTGTTGG
ACGACGCATTTGCCTTGGATTGCCACTAGCACAAAAAGTGATGTACCTTGTTCTGGGGACACTGGTGCATCAGTTTGAAT
GGACCCTTCCTGAAGAGCTCAAGGAGACTGGTATAGACATGACAGAAAAATGTGGAATGGTGCTATGTCTCGCAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis