Browse Element(s) Details


OsAffx.13052.1.S1_at

Description tigr:9631.m02590
TID=OsAffx.13052.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative far-red impaired response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2636011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26329Os.24831.3.S1_x_at6/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.1.S1_x_at5/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.4.S1_x_at4/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.4.S1_x_at4/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.49936.2.A1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.52311.1.S1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.53142.1.S1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.20823.2.S1_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.20823.2.S1_x_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.1.S1_x_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.3.S1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.1651.1.S1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.22945.1.S1_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.23706.1.A1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.3.S1_s_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.1651.1.S1_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26350NANA3+15042954..15049278transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g26360OsAffx.13052.1.S1_at11/113+15049574..15054050expressed protein
LOC_Os03g26360Os.23302.1.A1_at11/113+15049574..15054050expressed protein
LOC_Os03g26360OsAffx.13052.2.S1_at2/113+15049574..15054050expressed protein
LOC_Os03g26370NANA3+15054822..15055388Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g26380Os.14919.1.S1_at5/113+15056464..15059399hypothetical protein
LOC_Os03g26380Os.56216.1.S1_at2/113+15056464..15059399hypothetical protein
LOC_Os03g26390NANA3+15060630..15066767retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26400OsAffx.21897.5.S1_x_at4/113+15067056..15069980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26420OsAffx.13053.1.S1_at11/113+15075879..15076541Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0009639biological_processresponse to red or far red light
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13052.1.S1_at--102--9051Chr03:15052693..15052717 (25 bp)
TGCAGACATGACATCCACTCAAAGG
LOC_Os03g26360
OsAffx.13052.1.S1_at--1086--51Chr03:15052802..15052826 (25 bp)
ATTGCACGTCTTCGCCGGAAAGAGT
LOC_Os03g26360
OsAffx.13052.1.S1_at--236--131Chr03:15052851..15052875 (25 bp)
ATTCAGATCCAATTCTTTGTATCAG
LOC_Os03g26360
OsAffx.13052.1.S1_at--42--3691Chr03:15052865..15052889 (25 bp)
CTTTGTATCAGTAACTTGCCAATGT
LOC_Os03g26360
OsAffx.13052.1.S1_at--742--10691Chr03:15052880..15052904 (25 bp)
TTGCCAATGTTGAAGACAGCCGCTG
LOC_Os03g26360
OsAffx.13052.1.S1_at--174--5651Chr03:15052894..15052918 (25 bp)
GACAGCCGCTGAATCATATACGAGA
LOC_Os03g26360
OsAffx.13052.1.S1_at--357--271Chr03:15052920..15052944 (25 bp)
ATATGTATTCTGCTTTTGAGGAGGA
LOC_Os03g26360
OsAffx.13052.1.S1_at--703--5531Chr03:15052951..15052975 (25 bp)
GAAACAATTTGTTCTATCATGCACA
LOC_Os03g26360
OsAffx.13052.1.S1_at--126--7631Chr03:15052991..15053015 (25 bp)
GGGACAATCAACACATACAAGGTAG
LOC_Os03g26360
OsAffx.13052.1.S1_at--228--6191Chr03:15053033..15053057 (25 bp)
GAGGACGAAGCAAGAGTCATCTTTA
LOC_Os03g26360
OsAffx.13052.1.S1_at--1019--2991Chr03:15053927..15053951 (25 bp)
AATGATATTTGTTCCGCCAATTCGA
LOC_Os03g26360
Target Sequence 
TGCAGACATGACATCCACTCAAAGGAGTGAAGAACTTTTGGTACAATATGATAAGTGCATTGCACGTCTTCGCCGGAAAG
AGTTGTATGAAGATCATAAATCACGGAATTCAGATCCAATTCTTTGTATCAGTAACTTGCCAATGTTGAAGACAGCCGCT
GAATCATATACGAGAAATATGTATTCTGCTTTTGAGGAGGAATTTCAGAAACAATTTGTTCTATCATGCACATTGATAAT
TCAAGAGGGGACAATCAACACATACAAGGTAGTAACTGTGGATCACAGTGAGGACGAAGCAAGAGTCATCTTTAATTCAG
TTCATATGAATATATCATGTTCTTGCAGGAAGTATAATTGTCTTGGAGAAGAAACCACACAGCCATCAAACATAAATATA
GCTGGAGCTTCACAGCCAACTGTTCAGGAACCACTTGACTCAAATACTGTGATGCCATTTGGTGACATTTCAATGATATT
TGTTCCGCCAATTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis