Browse Element(s) Details


OsAffx.13148.1.S1_at

Description tigr:9631.m03127
TID=OsAffx.13148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3179011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31750Os.12528.1.S1_x_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31750OsAffx.13147.1.S1_s_at11/113+18108053..18115025Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os03g31760OsAffx.22964.1.S1_at11/113+18121362..18126203expressed protein
LOC_Os03g31760Os.10698.1.S1_s_at11/113+18121362..18126203expressed protein
LOC_Os03g31770NANA3+18130048..18130290retrotransposon protein, putative, unclassified
LOC_Os03g31780OsAffx.13147.1.S1_s_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31780OsAffx.13147.1.S1_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31790OsAffx.13148.1.S1_at11/113+18138132..18138422hypothetical protein
LOC_Os03g31800OsAffx.29316.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800OsAffx.6261.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.27691.2.S1_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.7329.1.S1_s_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31810OsAffx.25330.1.S1_at9/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.16709.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.8676.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.23566.1.S1_at1/113+18151103..18152794hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13148.1.S1_at--264--5151Chr03:18138162..18138186 (25 bp)
GCAACAGCTTGTTATGGCGTCAGCA
LOC_Os03g31790
OsAffx.13148.1.S1_at--640--851Chr03:18138186..18138210 (25 bp)
ATGGCAGTGGTTAGCTTCTTGCAGC
LOC_Os03g31790
OsAffx.13148.1.S1_at--1064--9571Chr03:18138202..18138226 (25 bp)
TCTTGCAGCCTGTCAACGATGGAGA
LOC_Os03g31790
OsAffx.13148.1.S1_at--846--831Chr03:18138220..18138244 (25 bp)
ATGGAGATTATGATGGCCGCCCCGC
LOC_Os03g31790
OsAffx.13148.1.S1_at--863--9631Chr03:18138254..18138278 (25 bp)
TCAGGCGACGCATGCTAATCTCGAG
LOC_Os03g31790
OsAffx.13148.1.S1_at--278--3051Chr03:18138270..18138294 (25 bp)
AATCTCGAGCCGGATGGTATCAGTA
LOC_Os03g31790
OsAffx.13148.1.S1_at--875--811Chr03:18138283..18138307 (25 bp)
ATGGTATCAGTATCAGGCCAGGCGA
LOC_Os03g31790
OsAffx.13148.1.S1_at--1014--6251Chr03:18138313..18138337 (25 bp)
GATGGGTCTCAGGTGGCAACCAAAC
LOC_Os03g31790
OsAffx.13148.1.S1_at--512--11Chr03:18138340..18138364 (25 bp)
CTTGCAAGTTAATCCCAGGGTTGTC
LOC_Os03g31790
OsAffx.13148.1.S1_at--495--3471Chr03:18138355..18138379 (25 bp)
CAGGGTTGTCTCAGGCCATGCAATT
LOC_Os03g31790
OsAffx.13148.1.S1_at--856--8431Chr03:18138368..18138392 (25 bp)
GGCCATGCAATTTTTCCTCAAGGAA
LOC_Os03g31790
Target Sequence 
GCAACAGCTTGTTATGGCGTCAGCATGGCAGTGGTTAGCTTCTTGCAGCCTGTCAACGATGGAGATTATGATGGCCGCCC
CGCGCCTGAAGCTCAGGCGACGCATGCTAATCTCGAGCCGGATGGTATCAGTATCAGGCCAGGCGAGGGTGGATGGGTCT
CAGGTGGCAACCAAACAACTTGCAAGTTAATCCCAGGGTTGTCTCAGGCCATGCAATTTTTCCTCAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis