Browse Element(s) Details


OsAffx.13203.1.S1_at

Description tigr:9631.m03539
TID=OsAffx.13203.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g369442/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36900Os.34669.1.S1_at11/113+20431255..20435189RNA-binding protein, putative, expressed
LOC_Os03g36910Os.36445.1.S1_at11/113+20439573..20442118methyltransferase, FkbM family protein, expressed
LOC_Os03g36920OsAffx.25389.1.S1_at11/113+20442594..20445866NB-ARC domain containing protein, expressed
LOC_Os03g36930Os.57569.1.S1_at6/113+20447050..20451521Eukaryotic initiation factor 4A-3, putative, expressed
LOC_Os03g36944OsAffx.22709.1.S1_x_at11/113+20452370..20454531hypothetical protein
LOC_Os03g36944OsAffx.13203.1.S1_at2/113+20452370..20454531hypothetical protein
LOC_Os03g36960Os.30135.2.S1_x_at11/113+20455957..20456557expressed protein
LOC_Os03g36960Os.30135.1.S1_at11/113+20455957..20456557expressed protein
LOC_Os03g36970OsAffx.22708.5.S1_x_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.5.S1_at11/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.2.S1_x_at5/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36970OsAffx.22708.1.S1_x_at2/113+20458232..20458825retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.3.S1_x_at11/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g36980OsAffx.22708.4.S1_x_at7/113+20462201..20463295retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37000OsAffx.22706.1.S1_at11/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37000OsAffx.16865.1.S1_x_at1/113+20466138..20468283hypothetical protein
LOC_Os03g37010Os.3318.1.S1_at11/113+20470072..20473869glycosyltransferase, putative, expressed
LOC_Os03g37020NANA3+20474531..20475070hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13203.1.S1_at--76--3431Chr03:20454404..20454428 (25 bp)
CAGACGGCGAGTCCTCTGACATCTT
LOC_Os03g36944
OsAffx.13203.1.S1_at--511--9971Chr03:20454460..20454484 (25 bp)
TACCTTGCCGCGGTTGACGACGGCA
LOC_Os03g36944
OsAffx.13203.1.S1_at--557--8251Chr03:20454641..20454665 (25 bp)
GGCAGTCGCCGGTGGTTCCATCGCT
NONE
OsAffx.13203.1.S1_at--700--7231Chr03:20454645..20454669 (25 bp)
GTCGCCGGTGGTTCCATCGCTCCGT
NONE
OsAffx.13203.1.S1_at--1018--1291Chr03:20454713..20454737 (25 bp)
AGATGCCCTCGCTGGCAGTGGCGAT
NONE
OsAffx.13203.1.S1_at--993--7992Chr05:3626160..3626179 (20 bp)
GGATGGAAGGGCAATTTCGTCAAAT
NONE
OsAffx.13203.1.S1_at--691--8171Chr03:20454788..20454812 (25 bp)
GGAAGGGCAATTTCGTCAAATCACC
NONE
OsAffx.13203.1.S1_at--231--1071Chr03:20454791..20454815 (25 bp)
AGGGCAATTTCGTCAAATCACCCAC
NONE
OsAffx.13203.1.S1_at--798--3111Chr03:20454796..20454820 (25 bp)
AATTTCGTCAAATCACCCACCGAAG
NONE
OsAffx.13203.1.S1_at--732--7091Chr03:20454802..20454826 (25 bp)
GTCAAATCACCCACCGAAGAAGCAA
NONE
OsAffx.13203.1.S1_at--613--351Chr03:20454807..20454831 (25 bp)
ATCACCCACCGAAGAAGCAAAAATG
NONE
Target Sequence 
CAGACGGCGAGTCCTCTGACATCTTCCCCTCCCTCGACCTCACCACCTCCACCGACTACCTTGCCGCGGTTGACGACGGC
ATCCCGGAGGGGCAGTCGCCGGTGGTTCCATCGCTCCGTCCACCCGCGCACCCGCAGGTGCGCCTCGCTTCGCCATACCC
CCAGATGCCCTCGCTGGCAGTGGCGATGGGCTCATCCGGCGGCGCTGCCAGGGCTGCCGCCACGGAAGGGGAAGGATGGA
AGGGCAATTTCGTCAAATCACCCACCGAAGAAGCAAAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis