Browse Element(s) Details


OsAffx.15195.1.S1_at

Description tigr:9633.m04853
TID=OsAffx.15195.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5141011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51380Os.38282.1.S1_at11/115+29376716..29381572expressed protein
LOC_Os05g51380Os.51194.1.A1_x_at1/115+29376716..29381572expressed protein
LOC_Os05g51380Os.18659.1.S1_s_at1/115+29376716..29381572expressed protein
LOC_Os05g51390OsAffx.15193.1.S1_at11/115+29387196..29390727Lysine Decarboxylase, putative, expressed
LOC_Os05g51400OsAffx.15194.1.S1_at11/115+29397661..29401826serine/threonine protein kinase, putative
LOC_Os05g51420Os.9473.2.S1_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.1.S1_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51410OsAffx.15195.1.S1_at11/115+29405111..29409102expressed protein
LOC_Os05g51430OsAffx.15196.1.S1_at11/115+29409666..29410202hypothetical protein
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15195.1.S1_at--109--8011Chr05:29408719..29408743 (25 bp)
GGATGGAGGCAGAGCGCGACACGGG
LOC_Os05g51410
OsAffx.15195.1.S1_at--464--2191Chr05:29408790..29408814 (25 bp)
ACACAAGGTGTAGGTGCGCGCAGCC
LOC_Os05g51410
OsAffx.15195.1.S1_at--204--1951Chr05:29408839..29408863 (25 bp)
ACGGCGACTCGGTCTGGATTGGATC
LOC_Os05g51410
OsAffx.15195.1.S1_at--101--4611Chr05:29408842..29408866 (25 bp)
GCGACTCGGTCTGGATTGGATCGAT
LOC_Os05g51410
OsAffx.15195.1.S1_at--916--5711Chr05:29408844..29408867 (24 bp)
GACTCGGTCTGGATTGGATCGATGA
LOC_Os05g51410
OsAffx.15195.1.S1_at--241--3791Chr05:29408846..29408867 (22 bp)
CTCGGTCTGGATTGGATCGATGAAA
LOC_Os05g51410
OsAffx.15195.1.S1_at--1069--3951Chr05:29408848..29409009 (25 bp)
CGGTCTGGATTGGATCGATGAAATA
LOC_Os05g51410
OsAffx.15195.1.S1_at--701--511Chr05:29408861..29409022 (25 bp)
ATCGATGAAATATTACGTCGGTGGA
LOC_Os05g51410
OsAffx.15195.1.S1_at--463--5591Chr05:29409004..29409028 (25 bp)
GAAATATTACGTCGGTGGAAAGATT
LOC_Os05g51410
OsAffx.15195.1.S1_at--505--1391Chr05:29409037..29409061 (25 bp)
AGACCCTATCTTTCTCCATTTGGGC
LOC_Os05g51410
OsAffx.15195.1.S1_at--992--1771Chr05:29409039..29409063 (25 bp)
ACCCTATCTTTCTCCATTTGGGCGG
LOC_Os05g51410
Target Sequence 
GGATGGAGGCAGAGCGCGACACGGGGTGGAGGCAGGGAGCGGCGCCGTGCGGGACGGAGGCAGGGAGCGCGACACAAGGT
GTAGGTGCGCGCAGCCGCAAGGCGGGACGGCGGACGGCGGACGGCGACTCGGTCTGGATTGGATCGATGAAATATTACGT
CGGTGGAAAGATTTAAAAAATAGACCCTATCTTTCTCCATTTGGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis