Browse Element(s) Details


OsAffx.15197.1.S1_at

Description tigr:9633.m04855
TID=OsAffx.15197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hsp20alpha crystallin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5144011/11Hsp20/alpha crystallin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51390OsAffx.15193.1.S1_at11/115+29387196..29390727Lysine Decarboxylase, putative, expressed
LOC_Os05g51400OsAffx.15194.1.S1_at11/115+29397661..29401826serine/threonine protein kinase, putative
LOC_Os05g51420Os.9473.2.S1_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.1.S1_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51410OsAffx.15195.1.S1_at11/115+29405111..29409102expressed protein
LOC_Os05g51430OsAffx.15196.1.S1_at11/115+29409666..29410202hypothetical protein
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed
LOC_Os05g51490Os.22562.1.S1_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51490OsAffx.27405.1.S1_x_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15197.1.S1_at--24--9331Chr05:29411850..29411874 (25 bp)
TCCCACCTCCGTACAGGAGATCAAG
LOC_Os05g51440
OsAffx.15197.1.S1_at--208--3811Chr05:29411856..29411880 (25 bp)
CTCCGTACAGGAGATCAAGCAGAAA
LOC_Os05g51440
OsAffx.15197.1.S1_at--110--1531Chr05:29411873..29411897 (25 bp)
AGCAGAAAGCGCCTACCGCCAAGCA
LOC_Os05g51440
OsAffx.15197.1.S1_at--1045--1411Chr05:29411876..29411900 (25 bp)
AGAAAGCGCCTACCGCCAAGCAGGA
LOC_Os05g51440
OsAffx.15197.1.S1_at--517--5691Chr05:29411899..29411923 (25 bp)
GAGCCCCAACCCCAATTCGACGAGG
LOC_Os05g51440
OsAffx.15197.1.S1_at--667--3151Chr05:29411912..29411936 (25 bp)
AATTCGACGAGGCACCCAACAAGAA
LOC_Os05g51440
OsAffx.15197.1.S1_at--625--11Chr05:29411913..29411937 (25 bp)
ATTCGACGAGGCACCCAACAAGAAG
LOC_Os05g51440
OsAffx.15197.1.S1_at--192--10691Chr05:29412086..29412110 (25 bp)
TTGCCAAGCACAAGCCTGCAACGAC
LOC_Os05g51440
OsAffx.15197.1.S1_at--776--2211Chr05:29412095..29412119 (25 bp)
ACAAGCCTGCAACGACGACCGAGAG
LOC_Os05g51440
OsAffx.15197.1.S1_at--1042--2651Chr05:29412097..29412121 (25 bp)
AAGCCTGCAACGACGACCGAGAGGA
LOC_Os05g51440
OsAffx.15197.1.S1_at--968--4271Chr05:29412100..29412124 (25 bp)
CCTGCAACGACGACCGAGAGGAAGC
LOC_Os05g51440
Target Sequence 
TCCCACCTCCGTACAGGAGATCAAGCAGAAAGCGCCTACCGCCAAGCAGGAGCCCCAACCCCAATTCGACGAGGCACCCA
ACAAGAAGAAACAACAACAGGAGGAGGAGGAAGAAGCAGCCAAGAAGAAGCAGCAGCAGCTGCAGGAAGAGGAAGAAGCA
ACCAAGAAGAAGCAACAGGAGGAGGAGGAAGAAGCAGCCGCCAAGAAGACGAAGAAACTGCAGGAGGAAGAGGCGATTGC
CAAGCACAAGCCTGCAACGACGACCGAGAGGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis