Browse Element(s) Details


OsAffx.15279.1.S1_x_at

Description tigr:9634.m00512
TID=OsAffx.15279.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pyrophosphate-dependent phosphofructo-1-kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0586011/11Phosphofructokinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g05820Os.9144.1.S1_a_at9/116+2651070..2660303DNA repair protein RadA containing protein, expressed
LOC_Os06g05830Os.47887.2.A1_at11/116+2660305..2662279Protein kinase domain containing protein, expressed
LOC_Os06g05840Os.31312.5.S1_x_at2/116+2665546..2668847retrotransposon protein, putative, unclassified
LOC_Os06g05840Os.31312.2.S1_x_at2/116+2665546..2668847retrotransposon protein, putative, unclassified
LOC_Os06g05850NANA6+2669476..2675592retrotransposon protein, putative, unclassified
LOC_Os06g05870OsAffx.27467.1.S1_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05870Os.7199.1.S1_s_at11/116+2677431..2687182Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g05860OsAffx.15279.1.S1_x_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05860Os.26885.1.A1_at11/116+2677979..2682782Phosphofructokinase family protein, expressed
LOC_Os06g05880Os.10152.1.S1_at11/116+2689220..2692048Profilin-2, putative, expressed
LOC_Os06g05890Os.3398.1.S1_s_at11/116+2694461..2698473B-box zinc finger family protein, expressed
LOC_Os06g05900Os.51932.1.S1_at11/116+2698911..2704116Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed
LOC_Os06g05910Os.21888.1.S1_at10/116+2705063..2708710Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15279.1.S1_x_at--624--7131Chr06:2679321..2679345 (25 bp)
GTCATATGGTTATCGTTGTTGCGGA
LOC_Os06g05860
OsAffx.15279.1.S1_x_at--436--7711Chr06:2679296..2679320 (25 bp)
GGGTGCAGGGCAGAAACTTATTAAT
LOC_Os06g05860
OsAffx.15279.1.S1_x_at--738--9071Chr06:2679245..2679269 (25 bp)
TGCTTCAGGCAATTCGATTCTTCTT
LOC_Os06g05860
OsAffx.15279.1.S1_x_at--1075--7271Chr06:2678771..2678795 (25 bp)
GTGCCATTCCTAGCAATGCATCTGA
LOC_Os06g05860
OsAffx.15279.1.S1_x_at--651--7431Chr06:2678742..2678766 (25 bp)
GTGTATTGCACACTGTTGGCACACA
LOC_Os06g05860
OsAffx.15279.1.S1_x_at--643--3291Chr06:2678723..2678747 (25 bp)
CACACAGTGTGGTTCATGGAGCCAT
LOC_Os06g05860
OsAffx.15279.1.S1_x_at--789--8071Chr06:2678706..2678730 (25 bp)
GGAGCCATGGCTGGATACACTGGTT
LOC_Os06g05860
OsAffx.15279.1.S1_x_at--1158--9851Chr06:2678691..2678715 (25 bp)
TACACTGGTTTCACTGTTGGCCAAG
LOC_Os06g05860
OsAffx.15279.1.S1_x_at--441--8291Chr06:2678659..2678681 (23 bp)
GGCATTGCTATATCCCGTTTTACAG
LOC_Os06g05860
OsAffx.15279.1.S1_x_at--475--791Chr06:2678484..2678508 (25 bp)
ATGTGGGCAAGACTTCTCTCCTCAA
LOC_Os06g05860
OsAffx.15279.1.S1_x_at--1007--571Chr06:2678395..2678419 (25 bp)
ATCCAAGTTTTTCGATGGGCCGCCT
LOC_Os06g05860
Target Sequence 
GTCATATGGTTATCGTTGTTGCGGAGGGTGCAGGGCAGAAACTTATTAATGAAACAAAGGAATCAATGGGGAAAGATGCT
TCAGGCAATTCGATTCTTCTTGATGTTGGTCTTTGGTTATCTCAAAAGATAAAAGAGCATTTCAAGAAAATCAAGACTAC
TATAAATCTCAAGTATATAGATCCTACATACATGATACGTGCCATTCCTAGCAATGCATCTGACAATGTGTATTGCACAC
TGTTGGCACACAGTGTGGTTCATGGAGCCATGGCTGGATACACTGGTTTCACTGTTGGCCAAGTAAATGGTCGGCATTGC
TATATCCCGTTTTACAGGATCACAGAGAAGCAGAACAAAGTTTCAATTACTGATAGGATGTGGGCAAGACTTCTCTCCTC
AACCAACCAGCCAAGTTTCCTCAGCAAGAAAGATGTGGAGGACGCAAAGATGGAAGAAGAGAGAGCATCCAAGTTTTTCG
ATGGGCCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15279.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis