Browse Element(s) Details


OsAffx.15747.1.S1_at

Description tigr:9634.m03304
TID=OsAffx.15747.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3496010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34910OsAffx.13264.1.S1_x_at4/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.17017.1.S1_at3/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.13264.1.S1_at3/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.10233.1.S1_at2/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34910OsAffx.22682.2.S1_at2/116+20299384..20305565transposon protein, putative, Mutator sub-class
LOC_Os06g34920OsAffx.16430.1.S1_at1/116+20307338..20310697retrotransposon protein, putative, unclassified
LOC_Os06g34920OsAffx.24744.4.A1_at1/116+20307338..20310697retrotransposon protein, putative, unclassified
LOC_Os06g34930OsAffx.5014.1.S1_at11/116+20313564..20314273Zinc knuckle family protein
LOC_Os06g34930OsAffx.25437.1.S1_at1/116+20313564..20314273Zinc knuckle family protein
LOC_Os06g34940OsAffx.27944.1.S1_at3/116+20321475..20321708hypothetical protein
LOC_Os06g34940OsAffx.27944.1.S1_x_at3/116+20321475..20321708hypothetical protein
LOC_Os06g34950OsAffx.27945.1.S1_at7/116+20322526..20323937hypothetical protein
LOC_Os06g34950Os.57368.1.S1_at3/116+20322526..20323937hypothetical protein
LOC_Os06g34960OsAffx.15747.1.S1_at10/116+20325285..20333177Protein kinase domain containing protein, expressed
LOC_Os06g34970OsAffx.15748.1.S1_at11/116+20336991..20337407hypothetical protein
LOC_Os06g34980NANA6+20345077..20347635Transposable element protein, putative, Retrotrans_gag
LOC_Os06g34990OsAffx.15749.1.S1_at11/116+20348103..20348567Cytochrome P450 71A26, putative
LOC_Os06g35000Os.47004.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35000Os.51990.1.S1_at1/116+20348848..20352342retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15747.1.S1_at--946--10591Chr06:20329553..20329577 (25 bp)
TTCTGATTTTGGTACGGCAAGATCC
LOC_Os06g34960
OsAffx.15747.1.S1_at--967--8211Chr06:20329538..20329562 (25 bp)
GGCAAGATCCGGTTTTCCGAACAAG
LOC_Os06g34960
OsAffx.15747.1.S1_at--355--2891Chr06:20329516..20329540 (25 bp)
AAGGGTCGCAGGACAGACACTGTTT
LOC_Os06g34960
OsAffx.15747.1.S1_at--96--871Chr06:20329383..20329407 (25 bp)
ATGGCTCCGGAATATTCAACCAGAG
LOC_Os06g34960
OsAffx.15747.1.S1_at--216--7691Chr06:20329348..20329372 (25 bp)
GGGTAAATCGGATGTGTTCAGCTTT
LOC_Os06g34960
OsAffx.15747.1.S1_at--1103--3371Chr06:20329321..20329345 (25 bp)
CAGCCTGCTTCTTGAGATCGTAAGT
LOC_Os06g34960
OsAffx.15747.1.S1_at--1112--7131NONE
GTCTTCACGAATATGCATGGAGGCT
NONE
OsAffx.15747.1.S1_at--991--4551Chr06:20325521..20325545 (25 bp)
GCGCCACACCTGATGGGCCAGATTG
LOC_Os06g34960
OsAffx.15747.1.S1_at--751--1251Chr06:20325502..20325526 (25 bp)
AGATTGTGGGCTGCGCGCACATCGC
LOC_Os06g34960
OsAffx.15747.1.S1_at--709--791Chr06:20325437..20325461 (25 bp)
ATGTGGGACGTCGTGCTGATGCTCC
LOC_Os06g34960
OsAffx.15747.1.S1_at--458--6151Chr06:20325320..20325344 (25 bp)
GAGGTCCTGGCAAATGGCCACGACT
LOC_Os06g34960
Target Sequence 
TTCTGATTTTGGTACGGCAAGATCCGGTTTTCCGAACAAGGGTCGCAGGACAGACACTGTTTCAGGAACATACGGTTACA
TGGCTCCGGAATATTCAACCAGAGGAATATTTTCGGGTAAATCGGATGTGTTCAGCTTTGGCAGCCTGCTTCTTGAGATC
GTAAGTGGAAAGCGGAACGGAACTTGGTACTCGATTAGAGAAAGGAAGTCCATAAGTCTTCACGAATATGCATGGAGGCT
GGTGTTCGAGGAGAAGAACCCGGAGAGGCTGATCCGGTCGTCCCTGCGCATCAGCGTGGGCGGCGACGCGCCACACCTGA
TGGGCCAGATTGTGGGCTGCGCGCACATCGCGCTGCTGTGCGTCCAGGAGGACCCAGAGGACCGCCCGTCCATGTGGGAC
GTCGTGCTGATGCTCCACGGTGGCGTGGCAGCGCTCTCGGCGCTGCCGACGCCGAAGCAGCCGGCGCGCCGCTACGGCGG
CGGCAGGGAGCAGCGCCCCAAGTTCCGGGAGGTCCTGGCAAATGGCCACGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis