Browse Element(s) Details


OsAffx.16466.1.S1_at

Description tigr:9635.m02820
TID=OsAffx.16466.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2899011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28940Os.38150.1.A1_s_at9/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28940Os.11809.1.S1_at6/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28960OsAffx.16464.1.S1_at11/117+16987773..16988418hypothetical protein
LOC_Os07g28970Os.24942.4.A1_x_at6/117+16993244..16993959hypothetical protein
LOC_Os07g28970Os.24942.4.A1_at4/117+16993244..16993959hypothetical protein
LOC_Os07g28980OsAffx.31069.5.S1_at2/117+17000046..17005184hypothetical protein
LOC_Os07g28980OsAffx.31069.5.S1_x_at1/117+17000046..17005184hypothetical protein
LOC_Os07g28990OsAffx.16466.1.S1_at11/117+17008084..17008572expressed protein
LOC_Os07g29000Os.26886.1.S1_x_at8/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29000Os.26886.3.S1_x_at6/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29000OsAffx.16244.1.S1_x_at1/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29010NANA7+17015413..17016984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29020NANA7+17019392..17020946hypothetical protein
LOC_Os07g29030Os.26886.6.S1_s_at11/117+17022923..17025343hypothetical protein
LOC_Os07g29030Os.26886.2.S1_s_at11/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.16467.1.S1_at7/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.8338.1.S1_x_at3/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.8469.1.S1_x_at2/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.3425.1.S1_at1/117+17022923..17025343hypothetical protein
LOC_Os07g29030OsAffx.10020.1.S1_x_at1/117+17022923..17025343hypothetical protein
LOC_Os07g29040OsAffx.28654.1.S1_at8/117+17027048..17027537hypothetical protein
LOC_Os07g29050OsAffx.5478.1.S1_at10/117+17028739..17030885hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16466.1.S1_at--949--391Chr07:17008517..17008541 (25 bp)
ATCAGATCATGAGCGCCTCGCCCGT
LOC_Os07g28990
OsAffx.16466.1.S1_at--1154--3851Chr07:17008374..17008398 (25 bp)
CTGATCCAGCGCAGGTTCAAGGTGT
LOC_Os07g28990
OsAffx.16466.1.S1_at--131--9231Chr07:17008370..17008394 (25 bp)
TCCAGCGCAGGTTCAAGGTGTCGCA
LOC_Os07g28990
OsAffx.16466.1.S1_at--811--611Chr07:17008341..17008365 (25 bp)
ATGCTGGACGATCTGATGGCGCACC
LOC_Os07g28990
OsAffx.16466.1.S1_at--666--8111Chr07:17008336..17008360 (25 bp)
GGACGATCTGATGGCGCACCCGCTG
LOC_Os07g28990
OsAffx.16466.1.S1_at--435--4131Chr07:17008316..17008340 (25 bp)
CGCTGAAGCCCTTCGTCGGCGTCTG
LOC_Os07g28990
OsAffx.16466.1.S1_at--4--9631Chr07:17008232..17008256 (25 bp)
TCAGGAAGGTCCACGCCGAGCTCAT
LOC_Os07g28990
OsAffx.16466.1.S1_at--511--5911Chr07:17008215..17008239 (25 bp)
GAGCTCATGCACGTGGTCGCGCAGT
LOC_Os07g28990
OsAffx.16466.1.S1_at--122--9631Chr07:17008211..17008235 (25 bp)
TCATGCACGTGGTCGCGCAGTACAA
LOC_Os07g28990
OsAffx.16466.1.S1_at--1114--2931Chr07:17008188..17008212 (25 bp)
AAGGCCACCGGTGAGGCCTACATGG
LOC_Os07g28990
OsAffx.16466.1.S1_at--802--9351Chr07:17008124..17008148 (25 bp)
TCGACGACGTCCAGGCGACCCTGGA
LOC_Os07g28990
Target Sequence 
ATCAGATCATGAGCGCCTCGCCCGTGCCGCACCGCGTCCCCTCGCCGGCGCCGATCGACGACGAGGAGGACAAGGCGAAG
CGCAAGAAGACCGAGGTGGAGGTGGAGGGGGACGACGAGGGGGCGAAGCACAGCAAGACGGGGCTGATCCAGCGCAGGTT
CAAGGTGTCGCAGGAGATGCTGGACGATCTGATGGCGCACCCGCTGAAGCCCTTCGTCGGCGTCTGCCTCGACGACGTGC
CCGAGGGCGAGCAGCGGGACAGGCTCGCCGCCGACATGGAGGCGGTCAGGAAGGTCCACGCCGAGCTCATGCACGTGGTC
GCGCAGTACAAGGCCACCGGTGAGGCCTACATGGTGGTGGAGGCGCCGGAAGACGACGACGACCTCGCCCAAGTCGACGA
CGTCCAGGCGACCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis