Browse Element(s) Details


OsAffx.17417.1.S1_x_at

Description tigr:9637.m02758
TID=OsAffx.17417.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to WIP5 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g311509/11TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os08g393903/11Zinc finger, C2H2 type family protein, expressed
LOC_Os09g311402/11expressed protein
LOC_Os05g371902/11Zinc finger, C2H2 type family protein, expressed
LOC_Os06g409602/11Zinc finger, C2H2 type family protein, expressed
LOC_Os01g639801/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31130Os.15092.1.S1_at11/119+18714940..18717852sodium/dicarboxylate cotransporter, putative, expressed
LOC_Os09g31140Os.50050.1.S1_at11/119+18734064..18736064expressed protein
LOC_Os09g31140OsAffx.17417.1.S1_x_at2/119+18734064..18736064expressed protein
LOC_Os09g31150Os.51785.1.S1_at11/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.1.S1_x_at9/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.2.S1_x_at2/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.29835.1.S1_x_at1/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31160OsAffx.17971.1.S1_at9/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.55225.1.S1_at5/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.57362.1.S1_at1/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31170Os.55757.1.S1_s_at11/119+18748303..18751487expressed protein
LOC_Os09g31170OsAffx.30106.1.S1_at6/119+18748303..18751487expressed protein
LOC_Os09g31180Os.9253.1.S1_s_at11/119+18751264..1875319760S ribosomal protein L9, putative, expressed
LOC_Os09g31190OsAffx.6461.1.S1_at11/119+18753630..18754187MSF1-like conserved region family protein
LOC_Os09g31200Os.2407.1.S1_at11/119+18759705..18760622Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17417.1.S1_x_at--527--4031Chr09:18734402..18734426 (25 bp)
CGATCGGGCGTCTGAACAAGGGCCA
LOC_Os09g31140
OsAffx.17417.1.S1_x_at--209--2231Chr09:18734417..18734441 (25 bp)
ACAAGGGCCAGTACTGGATCCCGAC
LOC_Os09g31140
OsAffx.17417.1.S1_x_at--328--8371Chr09:18737837..18737861 (25 bp)
GGCGGGCTGCCGGAACAACATCGAC
LOC_Os09g31150
OsAffx.17417.1.S1_x_at--321--2671Chr09:18737874..18737898 (25 bp)
AAGCCGCTCAAGGACTTCAGGACGC
LOC_Os09g31150
OsAffx.17417.1.S1_x_at--142--3853Chr09:18737898..18737922 (25 bp)
CTGCAGACGCACTACAAGCGGAAGC
LOC_Os09g31150
OsAffx.17417.1.S1_x_at--930--5331Chr09:18737918..18737942 (25 bp)
GAAGCACGGGCTGAAGCCGTTCCTG
LOC_Os09g31150
OsAffx.17417.1.S1_x_at--238--8991Chr09:18737929..18737953 (25 bp)
TGAAGCCGTTCCTGTGCCGCAAGTG
LOC_Os09g31150
OsAffx.17417.1.S1_x_at--150--3232Chr09:18737948..18737972 (25 bp)
CAAGTGCGGCAAGGCGTTCGCCGTC
LOC_Os09g31150
OsAffx.17417.1.S1_x_at--218--7074Chr09:18737970..18737994 (25 bp)
GTCAAGGGCGACTGGCGCACCCACG
LOC_Os09g31150
OsAffx.17417.1.S1_x_at--661--8592Chr09:18738015..18738039 (25 bp)
TGGTACTGCCTCTGCGGCTCCGAGT
LOC_Os09g31150
OsAffx.17417.1.S1_x_at--839--9132Chr09:18738027..18738051 (25 bp)
TGCGGCTCCGAGTTCAAGCACAAGC
LOC_Os09g31150
Target Sequence 
CGATCGGGCGTCTGAACAAGGGCCAGTACTGGATCCCGACGCCGTCGCAGATCCTCATCGGCCCCACGCAGTTCTCCTGC
CCCGTCTGCTTCAAAACCTTCAACCGATACAACAACATGCAGATGCATATGTGGGGGCATGGGTCGCAGTACAGGAAGGG
GCCGGAGTCGCTGCGGGGGATACAGCCGACGGCGATGCTGCGGCTGCCGTGCTACTGCTGCGCGGCGGGCTGCCGGAACA
ACATCGACCACCCGCGGGCGAAGCCGCTCAAGGACTTCAGGACGCTGCAGACGCACTACAAGCGGAAGCACGGGCTGAAG
CCGTTCCTGTGCCGCAAGTGCGGCAAGGCGTTCGCCGTCAAGGGCGACTGGCGCACCCACGAGAAGAACTGCGGCAAGCT
CTGGTACTGCCTCTGCGGCTCCGAGTTCAAGCACAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17417.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis