Browse Element(s) Details


OsAffx.1755.1.S1_x_at

Description gb:NM_184025.1
DB_XREF= gi:34895177
GEN=B1051E10.25
TID=OsAffx.1755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1051E10.25 (B1051E10.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g197503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g145903/11hypothetical protein
LOC_Os05g104403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g249803/11hypothetical protein
LOC_Os10g316102/11hypothetical protein
LOC_Os05g245942/11Coatomer delta subunit, putative, expressed
LOC_Os06g336502/11hypothetical protein
LOC_Os10g312001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19694Os.53678.1.S1_at11/118+11779187..11791873NB-ARC domain containing protein, expressed
LOC_Os08g19710NANA8+11795807..11798967hypothetical protein
LOC_Os08g19720OsAffx.8279.1.S1_at1/118+11799424..11804598retrotransposon protein, putative, unclassified
LOC_Os08g19730OsAffx.16451.1.A1_x_at1/118+11805361..11806428hypothetical protein
LOC_Os08g19730Os.45161.1.A1_x_at1/118+11805361..11806428hypothetical protein
LOC_Os08g19730OsAffx.31867.1.S1_x_at1/118+11805361..11806428hypothetical protein
LOC_Os08g19740NANA8+11810195..11811119retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19750OsAffx.1755.1.S1_x_at3/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.6502.1.A1_at2/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.1755.1.S1_at2/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.21269.1.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.29073.1.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.8747.3.S1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750OsAffx.26189.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.55580.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.6502.1.A1_x_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19750Os.31613.1.S1_at1/118+11813870..11822737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19760NANA8+11823421..11825833retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19770OsAffx.29281.1.S1_at11/118+11834794..11839017hypothetical protein
LOC_Os08g19780Os.52794.1.S1_at3/118+11842913..11843542hypothetical protein
LOC_Os08g19790NANA8+11844467..11845412retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1755.1.S1_x_at--557--33199Chr12:18475967..18475986 (20 bp)
CACTCATCAATACAACTACTCTCGG
NONE
OsAffx.1755.1.S1_x_at--125--20193Chr12:18475967..18475987 (21 bp)
ACTCATCAATACAACTACTCTCGGC
NONE
OsAffx.1755.1.S1_x_at--523--37585Chr12:18475967..18475988 (22 bp)
CTCATCAATACAACTACTCTCGGCG
NONE
OsAffx.1755.1.S1_x_at--288--3738Chr12:3196731..3196755 (25 bp)
ATCAACCGGCGGAATTTGGCACCTG
NONE
OsAffx.1755.1.S1_x_at--1104--96928Chr12:3196732..3196756 (25 bp)
TCAACCGGCGGAATTTGGCACCTGA
NONE
OsAffx.1755.1.S1_x_at--218--42715Chr12:3196736..3196757 (22 bp)
CCGGCGGAATTTGGCACCTGACACG
NONE
OsAffx.1755.1.S1_x_at--3--8971Chr01:13955536..13955560 (25 bp)
TGACACGGGGCTGCATCGGATTTCG
NONE
OsAffx.1755.1.S1_x_at--976--9051Chr01:13955525..13955549 (25 bp)
TGCATCGGATTTCGATCTTCGACGA
NONE
OsAffx.1755.1.S1_x_at--800--4971Chr01:13955524..13955548 (25 bp)
GCATCGGATTTCGATCTTCGACGAA
NONE
OsAffx.1755.1.S1_x_at--75--31Chr01:13955522..13955546 (25 bp)
ATCGGATTTCGATCTTCGACGAAGG
NONE
OsAffx.1755.1.S1_x_at--19--9431Chr01:13955521..13955545 (25 bp)
TCGGATTTCGATCTTCGACGAAGGG
NONE
Target Sequence 
CACTCATCAATACAACTACTCTCGGCGCATCGCCACCCTCTTTACCGAGGTTTTACTTATCAACCGGCGGAATTTGGCAC
CTGACACGGGGCTGCATCGGATTTCGATCTTCGACGAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1755.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis