Browse Element(s) Details


OsAffx.17610.1.S1_at

Description tigr:9637.m00673
TID=OsAffx.17610.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0922011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09170OsAffx.8939.1.S1_x_at5/119+4909504..4909958hypothetical protein
LOC_Os09g09170OsAffx.8939.1.S1_at4/119+4909504..4909958hypothetical protein
LOC_Os09g09170OsAffx.9036.1.S1_at1/119+4909504..4909958hypothetical protein
LOC_Os09g09180NANA9+4913542..4914021hypothetical protein
LOC_Os09g09190Os.24831.3.S1_s_at9/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.24831.1.S1_x_at6/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.24831.3.S1_x_at4/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.55127.1.S1_at1/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09190Os.24831.4.S1_x_at1/119+4916482..4917183retrotransposon protein, putative, unclassified
LOC_Os09g09200Os.53142.1.S1_at2/119+4921538..4922698transposon protein, putative, unclassified
LOC_Os09g09200Os.46314.2.S1_x_at1/119+4921538..4922698transposon protein, putative, unclassified
LOC_Os09g09210OsAffx.29773.1.S1_s_at11/119+4928367..4931323expressed protein
LOC_Os09g09210OsAffx.29773.1.S1_at11/119+4928367..4931323expressed protein
LOC_Os09g09220OsAffx.17610.1.S1_at11/119+4932507..4941200Protein kinase domain containing protein, expressed
LOC_Os09g09230OsAffx.17611.1.S1_at11/119+4942208..4942863cinnamoyl CoA reductase, putative
LOC_Os09g09240NANA9+4948220..4954135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09250OsAffx.21897.5.S1_x_at4/119+4954357..4957281retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09260OsAffx.29774.1.S1_at11/119+4960788..4961434hypothetical protein
LOC_Os09g09270OsAffx.29775.1.S1_at10/119+4961897..4962715Dihydroflavonol-4-reductase, putative
LOC_Os09g09270OsAffx.29033.1.S1_at1/119+4961897..4962715Dihydroflavonol-4-reductase, putative
LOC_Os09g09279Os.54774.1.S1_x_at2/119+4965329..4966709NA
LOC_Os09g09279Os.54774.1.S1_at2/119+4965329..4966709NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17610.1.S1_at--83--5491Chr09:4940537..4940561 (25 bp)
GAACTTGGAGGCTAAGATCGCGGAT
LOC_Os09g09220
OsAffx.17610.1.S1_at--186--6391Chr09:4940552..4940576 (25 bp)
GATCGCGGATTTTGGCTTGTCTAAG
LOC_Os09g09220
OsAffx.17610.1.S1_at--804--4911Chr09:4940566..4940590 (25 bp)
GCTTGTCTAAGGCATTCAACCGTGA
LOC_Os09g09220
OsAffx.17610.1.S1_at--837--51Chr09:4940640..4940664 (25 bp)
ATTGATCCTGAGTATGTCATATCCA
LOC_Os09g09220
OsAffx.17610.1.S1_at--763--7131Chr09:4940655..4940679 (25 bp)
GTCATATCCAAATTCTTCTTCATCT
LOC_Os09g09220
OsAffx.17610.1.S1_at--626--651Chr09:4940929..4940953 (25 bp)
ATGCACGCATGCACGGTGTCTATGA
LOC_Os09g09220
OsAffx.17610.1.S1_at--373--6051Chr09:4940979..4941003 (25 bp)
GAGATAGGACTAATGTGCACTGCAC
LOC_Os09g09220
OsAffx.17610.1.S1_at--1133--8231Chr09:4941011..4941035 (25 bp)
GGCACATCGGCCTATGATGACTGAT
LOC_Os09g09220
OsAffx.17610.1.S1_at--533--2771Chr09:4941061..4941085 (25 bp)
AAGACCTCGAGCATGGTCGCGCTGG
LOC_Os09g09220
OsAffx.17610.1.S1_at--933--5871Chr09:4941096..4941120 (25 bp)
GAGCCCTCAATTGACCATGTCAGCA
LOC_Os09g09220
OsAffx.17610.1.S1_at--227--6391Chr09:4941144..4941168 (25 bp)
GATCGCCTGGAGAGGATTCCACTGC
LOC_Os09g09220
Target Sequence 
GAACTTGGAGGCTAAGATCGCGGATTTTGGCTTGTCTAAGGCATTCAACCGTGATAGTGACACACATGTATCAACAAGTA
TACTTGTTGGAACACCTGGATACATTGATCCTGAGTATGTCATATCCAAATTCTTCTTCATCTGTTATATTCAAAGTCTT
ACCACCAAAGAGCTGGTCACGGGGAAGTCACCCATCCTTCGTACCCCGGAGCCAATCAGCCTTATCCATTGGGCACAACA
GCGCATGCAATGTGGAAACATCGAGGGTGTGGTGGATGCACGCATGCACGGTGTCTATGATGTCAACAGTGTCTGGAAGG
TTGCAGAGATAGGACTAATGTGCACTGCACAGGCATCGGCACATCGGCCTATGATGACTGATGTAGTGGCAAAACTGCAA
GAATGCCAAGACCTCGAGCATGGTCGCGCTGGCAGTGTTGCCGAGCCCTCAATTGACCATGTCAGCAAAACTAACACCAT
ATTTGAAATAGATCGCCTGGAGAGGATTCCACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis