Browse Element(s) Details


OsAffx.17849.1.S1_at

Description tigr:9637.m01951
TID=OsAffx.17849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2242011/11hypothetical protein
LOC_Os09g217901/11hypothetical protein
LOC_Os09g225201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g22360NANA9+13508239..13514349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g22370OsAffx.29975.2.S1_at11/119+13518939..13521063hypothetical protein
LOC_Os09g22380NANA9+13521536..13522892hypothetical protein
LOC_Os09g22390OsAffx.17848.4.S1_x_at2/119+13526084..13527210transposon protein, putative, unclassified
LOC_Os09g22400OsAffx.17848.3.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.1.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.5.S1_x_at4/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.2.S1_x_at2/119+13527868..13530733hypothetical protein
LOC_Os09g22400OsAffx.17848.1.S1_at2/119+13527868..13530733hypothetical protein
LOC_Os09g22410Os.18503.1.S1_s_at11/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22410Os.18503.1.S1_at7/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22410OsAffx.6365.1.S1_at3/119+13531932..13533249pyruvate kinase, putative, expressed
LOC_Os09g22420OsAffx.17849.1.S1_at11/119+13536731..13537689hypothetical protein
LOC_Os09g22420OsAffx.6361.1.S1_at2/119+13536731..13537689hypothetical protein
LOC_Os09g22430OsAffx.6366.1.S1_at11/119+13538170..13539189hypothetical protein
LOC_Os09g22440Os.9979.1.S1_at11/119+13552672..13557088expressed protein
LOC_Os09g22450Os.6774.1.S1_at11/119+13558547..13562069Lipase family protein, expressed
LOC_Os09g22460OsAffx.29976.1.S1_at11/119+13562564..13563715F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17849.1.S1_at--655--8292Chr09:13537580..13537604 (25 bp)
GGCTTCGCGCTGACGTGCCGGCACT
LOC_Os09g22420
OsAffx.17849.1.S1_at--521--4791Chr09:13537512..13537536 (25 bp)
GCTCCTACTCAGCTGCGCGGATGTC
LOC_Os09g22420
OsAffx.17849.1.S1_at--336--4571Chr09:13537498..13537522 (25 bp)
GCGCGGATGTCGTCGGTCGAACCAA
LOC_Os09g22420
OsAffx.17849.1.S1_at--562--7171Chr09:13537491..13537511 (21 bp)
GTCGGTCGAACCAACATCAGGGTGT
LOC_Os09g22420
OsAffx.17849.1.S1_at--467--5432Chr09:13537270..13537504 (25 bp)
GAACCAACATCAGGGTGTACTGCGT
LOC_Os09g22420
OsAffx.17849.1.S1_at--130--4231Chr09:13537218..13537242 (25 bp)
CCGCTCGACCGAACGGAGTTCAACG
LOC_Os09g22420
OsAffx.17849.1.S1_at--841--6232Chr09:13537028..13537162 (25 bp)
GATGGCTTGCTTTGACAGCCACCTC
LOC_Os09g22420
OsAffx.17849.1.S1_at--563--9851Chr09:13536961..13536985 (25 bp)
TACAATGGTGCACCTATCCATGTCA
LOC_Os09g22420
OsAffx.17849.1.S1_at--750--7331Chr09:13536954..13536978 (25 bp)
GTGCACCTATCCATGTCACTAAGCT
LOC_Os09g22420
OsAffx.17849.1.S1_at--336--7551Chr09:13536791..13536815 (25 bp)
GTGGCCTAAGACCATCCATTTGACC
LOC_Os09g22420
OsAffx.17849.1.S1_at--552--571Chr09:13536778..13536802 (25 bp)
ATCCATTTGACCTTATTGTTCGTGA
LOC_Os09g22420
Target Sequence 
GGCTTCGCGCTGACGTGCCGGCACTGGCGCTCCGCCGTGTCGCCCTTCTATCCAGCGTGGATCACCCCGCTCCTACTCAG
CTGCGCGGATGTCGTCGGTCGAACCAACATCAGGGTGTACTGCGTCAACACGACCCTGGCGCTACAGCTCACCCGCTCGA
CCGAACGGAGTTCAACGTGGAAGCAGGGACACAGCTAATTCCGGCGGCGCGATCAGCAACCCGGTGCTCCACGATGGCTT
GCTTTGACAGCCACCTCTTTGAGTCGGACCAAGGTGAGCTCATGGCTGTCCTCGTCGGCTACAATGGTGCACCTATCCAT
GTCACTAAGCTCAATGAGACGACGATGGAGTGGGACAAGTTAGAGACCTGGGAAGGACGGGCGCTGTTCACGGGAACATA
CACAACAATGATGAGGAAGACTAAGTTCAAGTCGATGCAAAACAAGGTTTTCCTTCCCAAGTTGTATGAGTGGCCTAAGA
CCATCCATTTGACCTTATTGTTCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis