Browse Element(s) Details


OsAffx.17989.1.S1_s_at

Description tigr:9637.m02917
TID=OsAffx.17989.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase Pti1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3386011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33820Os.14901.1.A1_a_at11/119+19964721..19969670phospholipase A1, putative, expressed
LOC_Os09g33830OsAffx.30129.1.S1_at11/119+19970022..19974776anthocyanin-related membrane protein 1, putative, expressed
LOC_Os09g33840OsAffx.19826.2.S1_at4/119+19977286..19979138hypothetical protein
LOC_Os09g33840OsAffx.20913.1.A1_at1/119+19977286..19979138hypothetical protein
LOC_Os09g33850OsAffx.30130.1.S1_at11/119+19979959..19985742Phosphatidylethanolamine-binding protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876Os.49366.1.S1_at11/119+20000609..20006080ARI, RING finger protein, putative, expressed
LOC_Os09g33882Os.55230.1.S1_at11/119+20006443..20007191expressed protein
LOC_Os09g33882Os.55230.1.S1_x_at11/119+20006443..20007191expressed protein
LOC_Os09g33890OsAffx.30131.1.S1_at11/119+20008662..20010318hypothetical protein
LOC_Os09g33900Os.54331.1.S1_at11/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900Os.54331.2.S1_at10/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17989.1.S1_s_at--1108--7791Chr09:19995029..19995053 (25 bp)
GGTCCCTGTCGTTACTGTTTCATGC
LOC_Os09g33860
OsAffx.17989.1.S1_s_at--883--6771Chr09:19995039..19995063 (25 bp)
GTTACTGTTTCATGCTTGCCAATTG
LOC_Os09g33860
OsAffx.17989.1.S1_s_at--898--10671Chr09:19995054..19995078 (25 bp)
TTGCCAATTGGTTACCATGCCGTTT
LOC_Os09g33860
OsAffx.17989.1.S1_s_at--824--3471Chr09:19995069..19995093 (25 bp)
CATGCCGTTTAAGTACTGGTCCTGT
LOC_Os09g33860
OsAffx.17989.1.S1_s_at--70--7011Chr09:19995081..19995105 (25 bp)
GTACTGGTCCTGTGAGCTTTACAAT
LOC_Os09g33860
OsAffx.17989.1.S1_s_at--422--10851Chr09:19995112..19995136 (25 bp)
TTGGTGTTTACACTCGGAGCTTTCC
LOC_Os09g33860
OsAffx.17989.1.S1_s_at--599--8051Chr09:19995127..19995151 (25 bp)
GGAGCTTTCCTTGTCATTCCTTTCA
LOC_Os09g33860
OsAffx.17989.1.S1_s_at--442--91Chr09:19995142..19995166 (25 bp)
ATTCCTTTCATGTGTGCTTATGCTG
LOC_Os09g33860
OsAffx.17989.1.S1_s_at--872--4891Chr09:19995157..19995181 (25 bp)
GCTTATGCTGAGTGCTGTGCTGCCT
LOC_Os09g33860
OsAffx.17989.1.S1_s_at--938--8691Chr09:19995172..19995196 (25 bp)
TGTGCTGCCTTCGTTGGTCGGCAAA
LOC_Os09g33860
OsAffx.17989.1.S1_s_at--911--5131Chr09:19995192..19995216 (25 bp)
GCAAAGTTGTGTTTTTAGCTGCCCA
LOC_Os09g33860
Target Sequence 
GGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGA
TTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGG
TCGGCAAAGTTGTGTTTTTAGCTGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17989.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis