Browse Element(s) Details

OsAffx.18098.1.S1_at

Description

tigr:9638.m00211
TID=OsAffx.18098.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC116601 Putative disease resistance protein Hcr2-0B
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g03050	11/11	Leucine Rich Repeat family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g02980	Os.27263.1.S1_x_at	11/11	10	+	1218215..1225920	formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02980	Os.47973.1.S1_x_at	11/11	10	+	1218215..1225920	formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02980	OsAffx.32197.1.S1_x_at	1/11	10	+	1218215..1225920	formin homology 2 domain-containing protein, putative, expressed
LOC_Os10g02990	OsAffx.30250.1.S1_at	11/11	10	+	1227626..1229808	Leucine Rich Repeat family protein
LOC_Os10g03000	Os.46012.3.S1_x_at	10/11	10	+	1232066..1233550	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000	Os.46012.2.S1_x_at	9/11	10	+	1232066..1233550	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000	Os.46012.3.S1_at	4/11	10	+	1232066..1233550	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000	Os.27088.1.A1_x_at	4/11	10	+	1232066..1233550	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03000	Os.54691.1.S1_x_at	1/11	10	+	1232066..1233550	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03010	Os.38751.1.A1_at	6/11	10	+	1234850..1236279	retrotransposon protein, putative, unclassified
LOC_Os10g03010	OsAffx.28492.1.S1_at	1/11	10	+	1234850..1236279	retrotransposon protein, putative, unclassified
LOC_Os10g03010	OsAffx.10020.1.S1_x_at	1/11	10	+	1234850..1236279	retrotransposon protein, putative, unclassified
LOC_Os10g03020	OsAffx.31869.1.S1_at	10/11	10	+	1237711..1238826	retrotransposon protein, putative, unclassified
LOC_Os10g03020	OsAffx.31869.5.S1_x_at	7/11	10	+	1237711..1238826	retrotransposon protein, putative, unclassified
LOC_Os10g03020	OsAffx.31869.3.S1_s_at	3/11	10	+	1237711..1238826	retrotransposon protein, putative, unclassified
LOC_Os10g03020	OsAffx.31869.4.S1_x_at	1/11	10	+	1237711..1238826	retrotransposon protein, putative, unclassified
LOC_Os10g03020	OsAffx.31869.4.S1_at	1/11	10	+	1237711..1238826	retrotransposon protein, putative, unclassified
LOC_Os10g03020	OsAffx.31869.2.S1_at	1/11	10	+	1237711..1238826	retrotransposon protein, putative, unclassified
LOC_Os10g03030	Os.38751.1.A1_at	5/11	10	+	1240040..1241469	retrotransposon protein, putative, unclassified
LOC_Os10g03030	OsAffx.10020.1.S1_x_at	1/11	10	+	1240040..1241469	retrotransposon protein, putative, unclassified
LOC_Os10g03030	OsAffx.28492.1.S1_at	1/11	10	+	1240040..1241469	retrotransposon protein, putative, unclassified
LOC_Os10g03040	Os.20851.1.A1_x_at	2/11	10	+	1242412..1247731	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040	OsAffx.5035.1.S1_at	1/11	10	+	1242412..1247731	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040	Os.55580.1.S1_at	1/11	10	+	1242412..1247731	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040	Os.6502.1.A1_at	1/11	10	+	1242412..1247731	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03040	Os.6502.1.A1_x_at	1/11	10	+	1242412..1247731	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03050	OsAffx.18098.1.S1_at	11/11	10	+	1249433..1250617	Leucine Rich Repeat family protein, expressed
LOC_Os10g03060	OsAffx.20784.1.S1_at	11/11	10	+	1258752..1260367	hypothetical protein
LOC_Os10g03070	OsAffx.32166.1218.S1_x_at	3/11	10	+	1262999..1274485	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03070	OsAffx.1349.1.S1_x_at	1/11	10	+	1262999..1274485	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03070	OsAffx.30280.1.S1_x_at	1/11	10	+	1262999..1274485	retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598	biological_process	detection of pathogenic bacteria
GO:0016020	cellular_component	membrane
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004675	molecular_function	transmembrane receptor protein serine/threonine kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.18098.1.S1_at--754--263	1	Chr10:1250008..1250032 (25 bp)	AACCTAGCTACTTTGCAACTATATG	LOC_Os10g03050
OsAffx.18098.1.S1_at--388--253	1	Chr10:1249953..1249977 (25 bp)	AACTTTGCATGCTCACGAAGATCCA	LOC_Os10g03050
OsAffx.18098.1.S1_at--1107--635	1	Chr10:1249934..1249958 (25 bp)	GATCCAATATCTTGAACTTAGCGGT	LOC_Os10g03050
OsAffx.18098.1.S1_at--91--777	1	Chr10:1249897..1249921 (25 bp)	GGTGAACTTCCTTCATGTTTATCCA	LOC_Os10g03050
OsAffx.18098.1.S1_at--1048--305	1	Chr10:1249832..1249856 (25 bp)	AATCACGGGTTCCATCCCAAAAGAG	LOC_Os10g03050
OsAffx.18098.1.S1_at--1145--1043	1	Chr10:1249774..1249798 (25 bp)	TTAGGCAATAATACCTTTAGCGGCG	LOC_Os10g03050
OsAffx.18098.1.S1_at--920--631	1	Chr10:1249646..1249670 (25 bp)	GATGCAATACCTTGGTCTTAACAGT	LOC_Os10g03050
OsAffx.18098.1.S1_at--266--253	1	Chr10:1249617..1249641 (25 bp)	AACTTACTAGCGAAATCCCTGCATG	LOC_Os10g03050
OsAffx.18098.1.S1_at--390--55	1	Chr10:1249603..1249627 (25 bp)	ATCCCTGCATGTTTATCCGATCTAA	LOC_Os10g03050
OsAffx.18098.1.S1_at--20--261	1	Chr10:1249504..1249528 (25 bp)	AACCTGCATCTTTTAAATGTAGGCA	LOC_Os10g03050
OsAffx.18098.1.S1_at--778--691	1	Chr10:1249486..1249510 (25 bp)	GTAGGCAACAATGCCTTTAGCGGCG	LOC_Os10g03050

Target Sequence

AACCTAGCTACTTTGCAACTATATGGTAATGAACTGTCAGGGCCTATACCCCAAAAACTTTGCATGCTCACGAAGATCCA
ATATCTTGAACTTAGCGGTAATAAACTTACTGGTGAACTTCCTTCATGTTTATCCAATCTAACAAAGATGAAAGAACTTT
ACCTACACCAAAACCAAATCACGGGTTCCATCCCAAAAGAGATAGGAATGCTTGCTAACCTGCAACTTTTAAGTTTAGGC
AATAATACCTTTAGCGGCGAGATACCCACAACTCTAGCAAATCTGACCAACCTAGCTACTTTGTACCTATGGGGTAATGA
ACTTTCGGGGCCTATACCCCAAAAACTCTGCATGCTCACCAAGATGCAATACCTTGGTCTTAACAGTAACAAACTTACTA
GCGAAATCCCTGCATGTTTATCCGATCTAACGAAAATGGAAAAACTTTACCTATACCAAAACCAAATCACAGGTTCCATC
CCAAAAGAGATAGGAATGCTTGCTAACCTGCATCTTTTAAATGTAGGCAACAATGCCTTTAGCGGCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis