Browse Element(s) Details


OsAffx.18584.1.S1_at

Description tigr:9638.m03606
TID=OsAffx.18584.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3983010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39780Os.3095.1.S1_at11/1110+20963398..20967794protein phosphatase 2C homolog, putative, expressed
LOC_Os10g39790Os.46516.1.S1_at11/1110+20968971..20972019CorA-like Mg2+ transporter protein, expressed
LOC_Os10g39800Os.46632.1.S1_at11/1110+20972324..20975976hypothetical protein
LOC_Os10g39810Os.3082.1.S1_at10/1110+20978768..20981722Sterol desaturase family protein, expressed
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed
LOC_Os10g39870Os.46896.1.S1_at10/1110+21001807..21002970cytochrome c biogenesis protein CcmE family, putative, expressed
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative
LOC_Os10g39890OsAffx.20155.1.S1_at10/1110+21008624..21009742Pollen proteins Ole e I family protein
LOC_Os10g39900Os.22919.1.S1_at11/1110+21011214..21018389expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18584.1.S1_at--669--6591Chr10:20988745..20988769 (25 bp)
GATTGCAGACTTCACCTGTTTTCAT
LOC_Os10g39830
OsAffx.18584.1.S1_at--245--471Chr10:20988768..20988792 (25 bp)
ATCTCCACAAGTTTAAGGCCTCAAG
LOC_Os10g39830
OsAffx.18584.1.S1_at--669--6931NONE
GTAGGTTGCAGAATCAATCTTCCAA
NONE
OsAffx.18584.1.S1_at--861--3311Chr10:20989355..20989379 (25 bp)
CACATTCAGATGCTCCAAGGACGTT
LOC_Os10g39830
OsAffx.18584.1.S1_at--892--1171Chr10:20989386..20989410 (25 bp)
AGTACAACACCCTCTGATCAATCGT
LOC_Os10g39830
OsAffx.18584.1.S1_at--1142--6451Chr10:20989401..20989425 (25 bp)
GATCAATCGTAGTATCCAGCACCGG
LOC_Os10g39830
OsAffx.18584.1.S1_at--842--1771Chr10:20989421..20989445 (25 bp)
ACCGGCGCTTATGTGGAGCTCTGAA
LOC_Os10g39830
OsAffx.18584.1.S1_at--275--9771Chr10:20989448..20989472 (25 bp)
TAATGATTGATCCACCTGTGCTGCT
LOC_Os10g39830
OsAffx.18584.1.S1_at--93--6451Chr10:20989531..20989555 (25 bp)
GATCAGTTCAGTTCAGCGTTCAAGA
LOC_Os10g39830
OsAffx.18584.1.S1_at--100--8731Chr10:20989563..20989587 (25 bp)
TGTCTTAACCATTTCCTGCATGTGT
LOC_Os10g39830
OsAffx.18584.1.S1_at--846--7871Chr10:20989595..20989619 (25 bp)
GGTTTTTACTGTACTACTGGCAGAG
LOC_Os10g39830
Target Sequence 
GATTGCAGACTTCACCTGTTTTCATCTCCACAAGTTTAAGGCCTCAAGGATAAGTGTAGGTTGCAGAATCAATCTTCCAA
TTCTGAACAGCCAACTGAACACCAGTTGCGTCCGGGGCTGTTTGGAGTTAAGGGCAGCACAAAGATGCAAGAGACACGAA
GCTGATCAGTCACATTCAGATGCTCCAAGGACGTTATGCACAGTACAACACCCTCTGATCAATCGTAGTATCCAGCACCG
GCGCTTATGTGGAGCTCTGAATCTAATGATTGATCCACCTGTGCTGCTTGTGACTATGAAGACGATGTGCCAACGAGAAA
CTATGCAAAACTGCATATCCATGCTTGATCAGTTCAGTTCAGCGTTCAAGAATGTGCATGTCTTAACCATTTCCTGCATG
TGTATAGTATGGTTTTTACTGTACTACTGGCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis