Browse Element(s) Details


OsAffx.19217.2.S1_at

Description tigr:9639.m03394
TID=OsAffx.19217.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g439101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43870Os.23682.1.S1_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870Os.23682.1.S1_s_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.18864.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.17544.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.16132.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43890Os.13508.1.S1_at11/117+26240850..26243421emp24/gp25L/p24 family protein, putative, expressed
LOC_Os07g43900Os.11593.1.S1_x_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43900OsAffx.16705.1.S1_at11/117+26243830..26248846protein kinase family protein, putative, expressed
LOC_Os07g43910OsAffx.9072.1.S1_at11/117+26252338..26252776hypothetical protein
LOC_Os07g43910OsAffx.19217.2.S1_at1/117+26252338..26252776hypothetical protein
LOC_Os07g43940Os.11198.3.S1_x_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.11198.1.S1_a_at10/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43940Os.50043.1.A1_at1/117+26257567..26262128glucan endo-1,3-beta-glucosidase 4 precursor, putative, expressed
LOC_Os07g43950Os.38021.1.S1_at11/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43950OsAffx.28893.1.S1_at1/117+26263799..26266977RNA recognition motif family protein, expressed
LOC_Os07g43960OsAffx.28893.1.S1_at11/117+26269508..26271247expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19217.2.S1_at--1040--7551Chr11:21637546..21637570 (25 bp)
GGGCGCTGTCGGTCGTCGCCAACAG
NONE
OsAffx.19217.2.S1_at--991--8653Chr11:21637337..21637539 (25 bp)
TGTGTCAACAAGAAGGTGTGTCATA
NONE
OsAffx.19217.2.S1_at--547--1373Chr11:21637313..21637337 (25 bp)
AGAGCTGCACAAGGATGCGCCGTGC
NONE
OsAffx.19217.2.S1_at--287--2912Chr11:21637303..21637327 (25 bp)
AAGGATGCGCCGTGCGCGGACAACT
NONE
OsAffx.19217.2.S1_at--366--7291Chr11:21637292..21637316 (25 bp)
GTGCGCGGACAACTCTACTGTCGAT
NONE
OsAffx.19217.2.S1_at--289--2211Chr11:21637284..21637308 (25 bp)
ACAACTCTACTGTCGATGGTGCAAG
NONE
OsAffx.19217.2.S1_at--436--2011Chr11:21637281..21637305 (25 bp)
ACTCTACTGTCGATGGTGCAAGCTC
NONE
OsAffx.19217.2.S1_at--63--3732Chr11:21637278..21637302 (25 bp)
CTACTGTCGATGGTGCAAGCTCTGA
NONE
OsAffx.19217.2.S1_at--960--2691Chr11:21637262..21637286 (25 bp)
AAGCTCTGAAACCATGCCTCCTCAT
NONE
OsAffx.19217.2.S1_at--603--3912Chr11:21636810..21637219 (25 bp)
CTGGCACCGAGGTCCATCGAATTGC
NONE
OsAffx.19217.2.S1_at--148--6152Chr11:21636802..21637211 (25 bp)
GAGGTCCATCGAATTGCCATGTAAG
NONE
Target Sequence 
GGGCGCTGTCGGTCGTCGCCAACAGCTTCAGTGTGTCAACAAGAAGGTGTGTCATAGAGCTGCACAAGGATGCGCCGTGC
GCGGACAACTCTACTGTCGATGGTGCAAGCTCTGAAACCATGCCTCCTCATTGGGACTTTGGGAGTGAAAGGAAGAAGGA
GATAGAGAGGAGGCTGGCACCGAGGTCCATCGAATTGCCATGTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19217.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis