Browse Element(s) Details


OsAffx.19482.2.S1_x_at

Description tigr:9639.m00348
TID=OsAffx.19482.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cell death associated protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0436011/11cell death associated protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04300Os.46781.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.6654.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.51841.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.24379.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.45902.1.A1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04310NANA11+1794376..1795923Cytochrome P450 family protein
LOC_Os11g04320OsAffx.31572.1.S1_at11/1111+1797789..1799337phosphoglycerate mutase family protein, expressed
LOC_Os11g04330Os.56229.1.S1_at11/1111+1800185..1801663Kelch motif family protein, expressed
LOC_Os11g04340OsAffx.6993.1.S1_at11/1111+1804515..1805027hypothetical protein
LOC_Os11g04350Os.50916.1.S1_at11/1111+1807130..1808535HSR203J, putative, expressed
LOC_Os11g04360OsAffx.19482.2.S1_x_at11/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360OsAffx.19482.1.S1_at5/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04360Os.5943.1.S1_at1/1111+1810758..1812624cell death associated protein, putative
LOC_Os11g04370Os.23431.1.A1_at11/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_s_at10/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04370OsAffx.19483.1.S1_at2/1111+1812629..1815757ribosomal protein L24 containing protein, expressed
LOC_Os11g04380Os.55139.1.S1_at11/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04380OsAffx.19217.1.S1_x_at2/1111+1817917..1819505phosphate translocator, putative, expressed
LOC_Os11g04390Os.12347.1.S1_x_at11/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04390Os.12347.4.S1_x_at10/1111+1820374..1827290RNA recognition motif family protein, expressed
LOC_Os11g04400Os.53517.2.S1_at1/1111+1828395..1831070GRAS family transcription factor containing protein
LOC_Os11g04409Os.4757.1.S1_at1/1111+1836657..1836818NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19482.2.S1_x_at--202--7531Chr11:1811505..1811529 (25 bp)
GTGGACAAGTTCGTCGTGCTCGCGT
LOC_Os11g04360
OsAffx.19482.2.S1_x_at--114--4131Chr11:1812117..1812139 (23 bp)
CCGCCGACGAAAGACACCGAGAAGT
LOC_Os11g04360
OsAffx.19482.2.S1_x_at--1040--5631Chr11:1812127..1812151 (25 bp)
GACACCGAGAAGTTCATCTGCCGCG
LOC_Os11g04360
OsAffx.19482.2.S1_x_at--170--752Chr12:1745703..1745727 (25 bp)
ATGTTTACGGCAGCGAGCCCAGTGA
NONE
OsAffx.19482.2.S1_x_at--816--1652Chr12:1745718..1745742 (25 bp)
AGCCCAGTGACCTCGCCGGAAAGTT
NONE
OsAffx.19482.2.S1_x_at--564--911Chr11:1812226..1812250 (25 bp)
AGGCTCTTCTTCACTAGCTGCAAGC
LOC_Os11g04360
OsAffx.19482.2.S1_x_at--413--4612Chr12:1745901..1745925 (25 bp)
GCGAGACGCAGAACTTCCGTTTCAA
NONE
OsAffx.19482.2.S1_x_at--659--5752Chr12:1745930..1745954 (25 bp)
GACGGGAGCTACACCGACTGGCTGA
NONE
OsAffx.19482.2.S1_x_at--418--8492Chr12:1745948..1745972 (25 bp)
TGGCTGATGGAGGAGCACCACTGCT
NONE
OsAffx.19482.2.S1_x_at--537--471Chr11:1812463..1812487 (25 bp)
ATCTGCCGGATGTATGTGTCGCCGA
LOC_Os11g04360
OsAffx.19482.2.S1_x_at--837--931Chr11:1812515..1812539 (25 bp)
AGGAATCCGCTGCTTTTGTGCAGCA
LOC_Os11g04360
Target Sequence 
GTGGACAAGTTCGTCGTGCTCGCGTTGCCGCCGACGAAAGACACCGAGAAGTTCATCTGCCGCGCCGATGTTTACGGCAG
CGAGCCCAGTGACCTCGCCGGAAAGTTCGCGCCGGTGCCCAGGTGCGAGAAAGGTGGCAGGCTCTTCTTCACTAGCTGCA
AGCGGCACAAGGGGAGTAGCACCAGGAAAGAGCGAACCGCGGGGGATGGCACCTGGGTGAGGCAGAACAGCAAGGGGGTG
AAGAACAAGGCAGGGGTCAAGGTCGGCGAGACGCAGAACTTCCGTTTCAAGAAGGACGGGAGCTACACCGACTGGCTGAT
GGAGGAGCACCACTGCTGCCGGCAGCAAGCCGTCGCCGGCGACGAGGAGCCCGTCATCTGCCGGATGTATGTGTCGCCGA
GGGCGCCTCCGGATTCCGCGGCGCGCCAGGAATCCGCTGCTTTTGTGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19482.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis