Browse Element(s) Details


OsAffx.19767.1.S1_x_at

Description tigr:9640.m02064
TID=OsAffx.19767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SRF-type transcription factor (DNA-binding and dimerisation domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2188011/11SRF-type transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21840NANA12+12296279..12296542hypothetical protein
LOC_Os12g21850OsAffx.7652.1.S1_at11/1112+12300816..12301400SRF-type transcription factor family protein, expressed
LOC_Os12g21860OsAffx.19765.1.S1_at10/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_x_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.19410.2.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860OsAffx.3097.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.12010.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.53191.1.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21870Os.17137.1.S1_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_x_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_at4/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.23947.1.A1_at3/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.27627.1.S1_at1/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21880OsAffx.19767.1.S1_x_at11/1112+12316858..12317606SRF-type transcription factor family protein
LOC_Os12g21890Os.23947.1.A1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.12702.1.S1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890OsAffx.19766.1.S1_x_at7/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.17137.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.27627.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21900Os.56089.1.S1_at1/1112+12331075..12332472retrotransposon protein, putative, unclassified
LOC_Os12g21910NANA12+12333606..12338741retrotransposon protein, putative, unclassified
LOC_Os12g21920OsAffx.19768.1.S1_at10/1112+12341793..12342834hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19767.1.S1_x_at--507--931Chr12:12317552..12317576 (25 bp)
AGGCAGCACATCGACAACAAGGAAA
LOC_Os12g21880
OsAffx.19767.1.S1_x_at--938--7191Chr12:12317438..12317462 (25 bp)
GTCGTCTTCTCCGAGACCAACCTTG
LOC_Os12g21880
OsAffx.19767.1.S1_x_at--993--3231Chr12:12317421..12317445 (25 bp)
CAACCTTGCCTACGCCTTCGGTGAC
LOC_Os12g21880
OsAffx.19767.1.S1_x_at--108--7651Chr12:12317353..12317377 (25 bp)
GGGAGGATGCTGAGCCCGCACCCGT
LOC_Os12g21880
OsAffx.19767.1.S1_x_at--1099--5071Chr12:12317336..12317360 (25 bp)
GCACCCGTCCACAGCGGCGGGTTAG
LOC_Os12g21880
OsAffx.19767.1.S1_x_at--44--7411Chr12:12317317..12317341 (25 bp)
GGTTAGGCAAGGACGTCGACCTCGA
LOC_Os12g21880
OsAffx.19767.1.S1_x_at--646--10071Chr12:12317314..12317338 (25 bp)
TAGGCAAGGACGTCGACCTCGAGAT
LOC_Os12g21880
OsAffx.19767.1.S1_x_at--862--1751Chr12:12316910..12317323 (25 bp)
ACCTCGAGATGCTGAGGCATAACAA
LOC_Os12g21880
OsAffx.19767.1.S1_x_at--905--4731Chr12:12316900..12316920 (21 bp)
GCTGAGGCATAACAATTGTGCTTCT
LOC_Os12g21880
OsAffx.19767.1.S1_x_at--150--8891Chr12:12316898..12316920 (23 bp)
TGAGGCATAACAATTGTGCTTCTTC
LOC_Os12g21880
OsAffx.19767.1.S1_x_at--874--2451Chr12:12316890..12316914 (25 bp)
AACAATTGTGCTTCTTCTCTGCAAT
LOC_Os12g21880
Target Sequence 
AGGCAGCACATCGACAACAAGGAAAGGCGGCAGGTCACCTTCACCAAGCGGCGGGGCGGGCTGTTCAAGAAGGCGTCGGA
GCTCGCCCTGCTCGCCGGCGCGAGCATCGCCGTCGTCGTCTTCTCCGAGACCAACCTTGCCTACGCCTTCGGTGACCCAT
CCGTCGACGCCGTCCTCCTCTCCTACGGCCCCGTCCCCGGGGAGGATGCTGAGCCCGCACCCGTCCACAGCGGCGGGTTA
GGCAAGGACGTCGACCTCGAGATGCTGAGGCATAACAATTGTGCTTCTTCTCTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19767.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis