Browse Element(s) Details


OsAffx.20100.3.S1_x_at

Description tigr:9631.m00463
TID=OsAffx.20100.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0541011/11hypothetical protein
LOC_Os11g156408/11Zinc knuckle family protein
LOC_Os12g430604/11retrotransposon protein, putative, unclassified
LOC_Os12g432904/11hypothetical protein
LOC_Os04g331203/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05380OsAffx.29410.2.S1_at11/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.13325.1.S1_at2/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.29576.5.S1_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.10155.1.S1_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05380OsAffx.10155.1.S1_x_at1/113+2621397..2623968hypothetical protein
LOC_Os03g05390Os.4707.1.S1_at11/113+2631062..2640812transmembrane protein, putative, expressed
LOC_Os03g05400NANA3+2643689..2645745retrotransposon protein, putative, unclassified
LOC_Os03g05410OsAffx.20100.3.S1_x_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.3.S1_at11/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.1.S1_x_at7/113+2646612..2648111hypothetical protein
LOC_Os03g05410OsAffx.20100.2.S1_x_at3/113+2646612..2648111hypothetical protein
LOC_Os03g05420Os.20315.2.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05420Os.20315.1.S1_at11/113+2656070..2661257MT-A70 family protein, expressed
LOC_Os03g05430OsAffx.24979.1.S1_at11/113+2661418..2664542signal peptidase I family protein, putative, expressed
LOC_Os03g05440Os.56829.1.S1_at11/113+2664693..2667402expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20100.3.S1_x_at--10--3092Chr11:8866642..8866666 (25 bp)
AATCAAGTGACTTTGCTGTAGCTGT
LOC_Os11g15640
OsAffx.20100.3.S1_x_at--207--3692Chr11:8866632..8866656 (25 bp)
CTTTGCTGTAGCTGTGGGAGTTGTT
LOC_Os11g15640
OsAffx.20100.3.S1_x_at--710--7631Chr03:2647155..2647179 (25 bp)
GGGAGTTGTTTTGTCTCAGACTGAT
LOC_Os03g05410
OsAffx.20100.3.S1_x_at--301--2892Chr11:8866532..8866556 (25 bp)
AAGGTGGCTGATGCTGCAGCTGAAA
LOC_Os11g15640
OsAffx.20100.3.S1_x_at--493--6215Chr12:26712761..26712785 (25 bp)
GAGGCTCTTAATGCTTTCATCAACA
LOC_Os12g43060
OsAffx.20100.3.S1_x_at--861--34Chr12:26712872..26712894 (23 bp)
ATTGTGCTCTAGAAGCTGTGGATAC
LOC_Os12g43060
OsAffx.20100.3.S1_x_at--791--1612Chr11:8866380..8866404 (25 bp)
AGCTGTGGATACAAATCTGAACTTA
LOC_Os11g15640
OsAffx.20100.3.S1_x_at--861--6315Chr12:26713007..26713031 (25 bp)
GATGAAGTCTTACATTCAGATGATT
LOC_Os12g43060
OsAffx.20100.3.S1_x_at--8--6935Chr12:26713032..26713056 (25 bp)
GTATGTCTGATTTTGATTATGCTGA
LOC_Os12g43060
OsAffx.20100.3.S1_x_at--1161--10352Chr11:8866119..8866138 (20 bp)
TTTTCAAGGTCACTCCTAAGTGTAG
NONE
OsAffx.20100.3.S1_x_at--265--7831Chr03:2646645..2646669 (25 bp)
GGTCACTCCTAAGTGTAGTGGCAAA
LOC_Os03g05410
Target Sequence 
AATCAAGTGACTTTGCTGTAGCTGTGGGAGTTGTTTTGTCTCAGACTGATGAAGACATGACAGAGGAGAAGAAGAAGAAA
AGTCTAAGACTTATGGAGAAGGAAGACAAGAAGGTGGCTGATGCTGCAGCTGAAAGGAAAGAGGCTCTTAATGCTTTCAT
CAACAAAGATTGTGCTCTAGAAGCTGTGGATACAAATCTGAACTTAATCAAAAATCTGGAATTGGCTAGGATAAATCTGT
TTTTAAAAGAGAAACTAAATACTTCTCAGAAAGGGGAGTGTGAAAATGTTGGGGAGAACTTGAGTAACATAGACATAAAC
ATAGATGAAGTCTTACATTCAGATGATTGTATGTCTGATTTTGATTATGCTGAAAACATGTTGAGACTTTCTCAAAGCAA
TTTATCAGGAAAAAAGAGGAGGAAAAATAACAGAGGAAACCTTGAGATTTTCAAGGTCACTCCTAAGTGTAGTGGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20100.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis