Browse Element(s) Details


OsAffx.20427.1.S1_at

Description gb:NM_196167.1
DB_XREF= gi:37533693
TID=OsAffx.20427.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0095C06.18), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2315011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23110OsAffx.16381.1.S1_x_at11/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.2.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.3.S1_x_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_at3/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.27522.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.3613.1.S1_x_at2/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16381.4.A1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23110OsAffx.16187.1.S1_at1/1110+11724253..11733513hypothetical protein
LOC_Os10g23120Os.16785.1.S1_at11/1110+11736406..11742276pyridoxamine 5'-phosphate oxidase, putative, expressed
LOC_Os10g23130OsAffx.6744.1.S1_at11/1110+11746889..11749084Cytochrome P450 90D2, putative
LOC_Os10g23140NANA10+11749454..11750374retrotransposon protein, putative, unclassified
LOC_Os10g23150OsAffx.20427.1.S1_at11/1110+11750672..11753497retrotransposon protein, putative, unclassified
LOC_Os10g23160NANA10+11754855..11756111ent-kaurenoic acid oxidase, putative
LOC_Os10g23180Os.18932.1.S1_at11/1110+11758871..11767257Cytochrome P450 family protein, expressed
LOC_Os10g23190OsAffx.29313.1.S1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190OsAffx.22896.1.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.46314.2.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.10731.2.A1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23204Os.9220.1.S1_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30513.1.S1_s_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30514.2.S1_s_at10/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204Os.56258.1.S1_at2/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28551.1.S1_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28418.2.S1_x_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20427.1.S1_at--207--3771Chr10:11752174..11752198 (25 bp)
CTCTTTCTACAAGTTCTGCTCAAAA
LOC_Os10g23150
OsAffx.20427.1.S1_at--268--8551Chr10:11752246..11752270 (25 bp)
TGGAGGCAGACCTCTTGCCTTGCAA
LOC_Os10g23150
OsAffx.20427.1.S1_at--904--10691Chr10:11752260..11752284 (25 bp)
TTGCCTTGCAATTCCCAACTTTGTT
LOC_Os10g23150
OsAffx.20427.1.S1_at--169--2151Chr10:11752402..11752426 (25 bp)
ACAGAGCTGTGTTGGTCTAACCTTA
LOC_Os10g23150
OsAffx.20427.1.S1_at--464--991Chr10:11752467..11752491 (25 bp)
AGGATGGTTCTTTCACTGTCAAGTC
LOC_Os10g23150
OsAffx.20427.1.S1_at--423--3871Chr10:11752482..11752506 (25 bp)
CTGTCAAGTCCTTCTATTTAGCTCT
LOC_Os10g23150
OsAffx.20427.1.S1_at--33--8231Chr10:11753141..11753165 (25 bp)
GGCAATTGGTGTGTCGTTTCTCCTA
LOC_Os10g23150
OsAffx.20427.1.S1_at--1142--6831Chr10:11753156..11753180 (25 bp)
GTTTCTCCTAGTTTCTGTCTGGAAA
LOC_Os10g23150
OsAffx.20427.1.S1_at--264--5591Chr10:11753177..11753201 (25 bp)
GAAATCTCCCTATAAACGATCCACC
LOC_Os10g23150
OsAffx.20427.1.S1_at--812--3351Chr10:11753198..11753222 (25 bp)
CACCCTCATCCAAATTGTGACTCTT
LOC_Os10g23150
OsAffx.20427.1.S1_at--293--3751Chr10:11753218..11753242 (25 bp)
CTCTTTTTGGGCACTTGTATGGGAA
LOC_Os10g23150
Target Sequence 
CTCTTTCTACAAGTTCTGCTCAAAAAAACTGGGTGATGGTAAACAAACCTTGTTCTGGGAAGATAACTGGATTGGAGGCA
GACCTCTTGCCTTGCAATTCCCAACTTTGTTCAATATAACAACCACTAAACAAATCATTGTGTCCAAAGTTATGTTGGGA
GGCTGGGATGCAATTAAATTCAGGAGAACTTTACATGGTGACAGACTTATGGAGTGGAATAAGATAAAACAGAGCTGTGT
TGGTCTAACCTTACAGGAGGGGGTTAGAGATAAAATCTGGTGGAAACTGACCAAGGATGGTTCTTTCACTGTCAAGTCCT
TCTATTTAGCTCTTAAAATGCAACAAAAACTGGAGGCAAATCGAAGAAGACTGGAGCTGGGAGCCAGGCTGGTGGCAATT
GGTGTGTCGTTTCTCCTAGTTTCTGTCTGGAAATCTCCCTATAAACGATCCACCCTCATCCAAATTGTGACTCTTTTTGG
GCACTTGTATGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis