Browse Element(s) Details


OsAffx.21247.2.S1_at

Description tigr:9629.m03454
TID=OsAffx.21247.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g365909/11nodulin, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36540OsAffx.23530.1.S1_at11/111+20607702..20609411pentatricopeptide, putative, expressed
LOC_Os01g36550OsAffx.21248.1.S1_x_at10/111+20611294..20614312Protein kinase domain containing protein
LOC_Os01g36560OsAffx.2166.1.S1_at11/111+20614702..20617477Integral membrane protein DUF6 containing protein
LOC_Os01g36570OsAffx.11352.1.S1_at8/111+20619437..20619733Glycine-rich protein 2, putative
LOC_Os01g36580Os.24515.1.S1_at10/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36580Os.24515.2.S1_at2/111+20626573..20629314Integral membrane protein DUF6 containing protein, expressed
LOC_Os01g36590OsAffx.21247.2.S1_s_at11/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.1.S1_at10/111+20631731..20637232nodulin, putative
LOC_Os01g36590OsAffx.21247.2.S1_at9/111+20631731..20637232nodulin, putative
LOC_Os01g36600Os.9812.1.S1_at10/111+20639797..20641027pentatricopeptide, putative, expressed
LOC_Os01g36610OsAffx.9010.1.S1_at11/111+20641163..20642953pentatricopeptide, putative
LOC_Os01g36620Os.35614.1.S1_at11/111+20644725..20646202Pectate lyase family protein, expressed
LOC_Os01g36630Os.33852.1.S1_at10/111+20649545..20653223jmjC domain containing protein, expressed
LOC_Os01g36640NANA1+20655983..20658700NB-ARC domain containing protein
LOC_Os01g36650OsAffx.21246.2.S1_s_at11/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.2.S1_at10/111+20660606..20663457expressed protein
LOC_Os01g36650OsAffx.21246.1.S1_at6/111+20660606..20663457expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21247.2.S1_at--708--4431NONE
GCCATCATCTATTGTCATAATAAGC
NONE
OsAffx.21247.2.S1_at--949--3511NONE
CATCTATTGTCATAATAAGCGGAGC
NONE
OsAffx.21247.2.S1_at--764--9651Chr01:20631878..20632333 (25 bp)
TCAGCAGTCAAGGAGCATATGGGAT
LOC_Os01g36590
OsAffx.21247.2.S1_at--1135--3431Chr01:20631874..20632329 (25 bp)
CAGTCAAGGAGCATATGGGATGTTG
LOC_Os01g36590
OsAffx.21247.2.S1_at--1074--8632Chr02:10229597..10229621 (25 bp)
TGGGATGTTGTCTGTGATGCCAGAA
NONE
OsAffx.21247.2.S1_at--447--7992Chr02:10229595..10229619 (25 bp)
GGATGTTGTCTGTGATGCCAGAAAT
NONE
OsAffx.21247.2.S1_at--1066--7172Chr02:10229588..10229612 (25 bp)
GTCTGTGATGCCAGAAATGCCCCTG
NONE
OsAffx.21247.2.S1_at--1153--3412Chr02:10229577..10229601 (25 bp)
CAGAAATGCCCCTGCTACAGCAACA
NONE
OsAffx.21247.2.S1_at--902--3271Chr01:20631819..20631843 (25 bp)
CAACAAGCTGTCCATGGCTGTTGCT
LOC_Os01g36590
OsAffx.21247.2.S1_at--296--8711Chr01:20631811..20631835 (25 bp)
TGTCCATGGCTGTTGCTGGCCAGAG
LOC_Os01g36590
OsAffx.21247.2.S1_at--679--9231Chr01:20631809..20631833 (25 bp)
TCCATGGCTGTTGCTGGCCAGAGCT
LOC_Os01g36590
Target Sequence 
GCCATCATCTATTGTCATAATAAGCGGAGCGCTGATGGTTGTGGGCCTGTATACTGTTCTCTTGGGGAAGAGGATAGAAG
AGGAGGGTATCAGCAGTCAAGGAGCATATGGGATGTTGTCTGTGATGCCAGAAATGCCCCTGCTACAGCAACAAGCTGTC
CATGGCTGTTGCTGGCCAGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21247.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis