Browse Element(s) Details


OsAffx.21993.1.S1_at

Description tigr:9636.m04110
TID=OsAffx.21993.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Thaumatin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4060011/11Thaumatin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40560Os.15831.4.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_x_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560Os.15831.3.S1_at11/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40560OsAffx.6874.1.S1_at1/118+25543843..25549501C2H2 zinc-finger protein, putative, expressed
LOC_Os08g40570Os.27275.1.S1_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40570Os.27275.2.S1_x_at11/118+25550586..25553679Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os08g40580Os.6650.1.S1_at11/118+25554795..25557771spermine/spermidine synthase, putative, expressed
LOC_Os08g40590Os.6381.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40590OsAffx.471.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40600OsAffx.21993.1.S1_at11/118+25567304..25568780Thaumatin family protein
LOC_Os08g40600OsAffx.21993.2.S1_x_at3/118+25567304..25568780Thaumatin family protein
LOC_Os08g40610Os.6512.1.S1_at11/118+25569799..25571502ribosomal protein S16 containing protein, expressed
LOC_Os08g40620Os.8803.1.S1_at11/118+25579971..25584766RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g40630Os.23927.1.S1_at11/118+25586637..25589064mTERF family protein, expressed
LOC_Os08g40640OsAffx.21990.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_x_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21992.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640Os.46785.2.S1_x_at5/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_x_at2/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.30226.2.S1_x_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21993.1.S1_at--554--9712Chr10:20077635..20077743 (25 bp)
TCAACCGCTCGTGTCCGAAGGAGTT
NONE
OsAffx.21993.1.S1_at--129--4232Chr10:20077631..20077739 (25 bp)
CCGCTCGTGTCCGAAGGAGTTGCAG
NONE
OsAffx.21993.1.S1_at--114--7692Chr08:25567597..25567620 (24 bp)
GGGTCGAACACCTCCGGTGTCACTC
LOC_Os08g40600
OsAffx.21993.1.S1_at--929--7731Chr08:25567582..25567606 (25 bp)
GGTGTCACTCCGCTGATTAGCTCGC
LOC_Os08g40600
OsAffx.21993.1.S1_at--956--7232Chr08:25567556..25567580 (25 bp)
GTCGCCGGCCAATGGCCAGAACGGC
LOC_Os08g40600
OsAffx.21993.1.S1_at--232--2951Chr08:25567498..25567522 (25 bp)
AATGGCGCCGGGATAATCAGCTACC
LOC_Os08g40600
OsAffx.21993.1.S1_at--282--7671Chr08:25567489..25567513 (25 bp)
GGGATAATCAGCTACCAGCCGCCTC
LOC_Os08g40600
OsAffx.21993.1.S1_at--697--8131Chr08:25567457..25567481 (25 bp)
GGACATCAATGGTGCCGGGAGCGCC
LOC_Os08g40600
OsAffx.21993.1.S1_at--557--4611Chr08:25567399..25567423 (25 bp)
GCGAGCAAGCGGATGATGCCGTCAT
LOC_Os08g40600
OsAffx.21993.1.S1_at--319--1511Chr08:25567363..25567387 (25 bp)
AGCACGCGGCACAACCAGCTGTGGT
LOC_Os08g40600
OsAffx.21993.1.S1_at--112--2651Chr08:25567351..25567375 (25 bp)
AACCAGCTGTGGTCTCTGCTGCTGC
LOC_Os08g40600
Target Sequence 
TCAACCGCTCGTGTCCGAAGGAGTTGCAGGTGGACGGCGTCGACGGCGGCGGCGGCAGCGGGACGGTGGCGTGCCGGAGC
GCGTGCGAGGCGTTCGGGGAGGAGGAGTACTGCTGCAGCGGCGCGTACGCGACGCCGGCGACGTGCCGGCCGACGGCGTA
CTCGGCCATCTTCAAGACGGCGTGCCCGCGCGCCTACAGCTACGCCTACGACGACGGCACGAGCACCTTCACCTGCAGCG
CCGCCGCCTACACCATCGCCTTCTGCCTCCCTCCCACCGGGTCGAACACCTCCGGTGTCACTCCGCTGATTAGCTCGCCG
TCGCCGGCCAATGGCCAGAACGGCGCCGGAGGCAGCACACCTCCTCCGGCTGGCAACAATGGCGCCGGGATAATCAGCTA
CCAGCCGCCTCCGACGGAGGACATCAATGGTGCCGGGAGCGCCGATCAGCCGGCGTGGATGACGATGCCGTCGTCGGCGA
GCAAGCGGATGATGCCGTCATCGTCGGCGGCGAGCACGCGGCACAACCAGCTGTGGTCTCTGCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis