Browse Element(s) Details


OsAffx.22177.1.S1_x_at

Description gb:NM_188119.1
DB_XREF= gi:34903321
TID=OsAffx.22177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g171603/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17120OsAffx.22947.5.S1_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.5.S1_x_at11/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.1.S1_x_at4/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.2.S1_x_at2/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17120OsAffx.22947.3.S1_x_at1/111+9835525..9839623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.9980.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17130OsAffx.16307.1.S1_at1/111+9842578..9845639retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g17150Os.7948.1.S1_a_at11/111+9856128..9857526expressed protein
LOC_Os01g17160Os.43666.1.S1_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160Os.43666.2.S1_x_at11/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_x_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17160OsAffx.22177.1.S1_at3/111+9863218..9867642DHHC zinc finger domain containing protein, expressed
LOC_Os01g17170Os.7868.1.S1_at11/111+9871104..9873729Magnesium-protoporphyrin IX monomethyl ester cyclase, chloroplast precursor, putative, expressed
LOC_Os01g17180Os.25964.1.S2_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.25964.1.S1_a_at11/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180OsAffx.2024.1.S1_at10/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17180Os.49920.1.S1_at1/111+9875145..9882327COP9 signalosome complex subunit 2, putative, expressed
LOC_Os01g17190Os.19793.1.S1_at11/111+9884416..9886104Calmodulin, putative, expressed
LOC_Os01g17214Os.17416.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.2.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_x_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.1.S1_at11/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.23281.2.S1_at10/111+9886328..9899515transporter, putative, expressed
LOC_Os01g17214OsAffx.22176.1.S1_at9/111+9886328..9899515transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22177.1.S1_x_at--912--1271Chr01:9862878..9862902 (25 bp)
AGATCAGCCCGCTGCGGGCGCTCAG
NONE
OsAffx.22177.1.S1_x_at--189--9651Chr01:9862899..9862923 (25 bp)
TCAGCCCCGGGCTGGTGTTCGACAC
NONE
OsAffx.22177.1.S1_x_at--397--10671Chr01:9862946..9862970 (25 bp)
TTCCTCTGCTACTACGGCTACAAGG
NONE
OsAffx.22177.1.S1_x_at--599--9931Chr01:9862958..9862982 (25 bp)
TACGGCTACAAGGAGCAGCTCGTCC
NONE
OsAffx.22177.1.S1_x_at--854--2911Chr01:9862967..9862991 (25 bp)
AAGGAGCAGCTCGTCCGCAAGCTCG
NONE
OsAffx.22177.1.S1_x_at--774--5831Chr01:9863048..9863072 (25 bp)
GACCTCATCGCGTCGGGCGTCAACT
NONE
OsAffx.22177.1.S1_x_at--560--4251Chr01:9863118..9863142 (25 bp)
CCGTGTCGCGCGTCGCCATGAACGT
NONE
OsAffx.22177.1.S1_x_at--454--5891Chr01:9863213..9863237 (25 bp)
GAGCGGCTGGTGTTCTCGAGCAGGT
NONE
OsAffx.22177.1.S1_x_at--304--8351Chr01:9863248..9863272 (25 bp)
GGCGTACCAGGTGAGCTTCGAGATC
LOC_Os01g17160
OsAffx.22177.1.S1_x_at--920--9971Chr01:9863252..9863276 (25 bp)
TACCAGGTGAGCTTCGAGATCGCCA
LOC_Os01g17160
OsAffx.22177.1.S1_x_at--695--3471Chr01:9863255..9863279 (25 bp)
CAGGTGAGCTTCGAGATCGCCAGCG
LOC_Os01g17160
Target Sequence 
AGATCAGCCCGCTGCGGGCGCTCAGCCCCGGGCTGGTGTTCGACACCACCACGCGCGACTACCTCAACTTCCTCTGCTAC
TACGGCTACAAGGAGCAGCTCGTCCGCAAGCTCGCCGGCGCTGGCGCCGCGGGCGCCGCCTTCGCGTGCCCGCGCGGCGC
GCCGTCGCCGGACCTCATCGCGTCGGGCGTCAACTACCCGTCCATCTCCGTGCCGCGGCTCCTCGCCGGGAGGACGGCCA
CCGTGTCGCGCGTCGCCATGAACGTGGGGCCACCGAACGCGACGTACGCCGCGGCCGTCGAGGCGCCCCCCGGCCTCGCC
GTGAAGGTGTCGCCGGAGCGGCTGGTGTTCTCGAGCAGGTGGACGACGGCGGCGTACCAGGTGAGCTTCGAGATCGCCAG
CG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22177.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis