Browse Element(s) Details


OsAffx.22521.1.S1_x_at

Description gb:NM_186129.1
DB_XREF= gi:34899343
GEN=P0625E02.37
TID=OsAffx.22521.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome3, AY039545.1 (P0625E02.37), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4741010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47360Os.11884.1.S1_s_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47360Os.20659.1.S1_x_at11/117+28323069..28333384CW-type Zinc Finger family protein, expressed
LOC_Os07g47370Os.30015.1.S1_at11/117+28333682..28335904pentatricopeptide, putative, expressed
LOC_Os07g47380OsAffx.28942.1.S1_at10/117+28336051..28337494expressed protein
LOC_Os07g47390OsAffx.16748.1.S1_at11/117+28338018..28338716C2 domain containing protein, expressed
LOC_Os07g47400Os.26494.1.S1_at11/117+28342440..28343698C2 domain containing protein, expressed
LOC_Os07g47410OsAffx.22521.2.S1_x_at11/117+28344918..28348166hypothetical protein
LOC_Os07g47410OsAffx.22521.1.S1_x_at10/117+28344918..28348166hypothetical protein
LOC_Os07g47420Os.18416.1.S1_at11/117+28350881..2835306660S ribosome subunit biogenesis protein NIP7 homolog, putative, expressed
LOC_Os07g47430NANA7+28357686..28358134hypothetical protein
LOC_Os07g47440OsAffx.26548.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47440OsAffx.25036.1.S1_at6/117+28363392..28365137retrotransposon protein, putative, unclassified
LOC_Os07g47450NANA7+28366202..28366653flowering promoting factor-like 1, putative, expressed
LOC_Os07g47460OsAffx.16750.1.S1_at11/117+28370141..28371194expressed protein
LOC_Os07g47470OsAffx.16751.1.S1_at11/117+28371675..28373330Rf1 protein, mitochondrial precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
GO:0010149biological_processsenescence (sensu Magnoliophyta)
GO:0042594biological_processresponse to starvation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22521.1.S1_x_at--620--8431Chr07:28347055..28347079 (25 bp)
GGCCAGTGTCAAGGGCACCATTGTG
LOC_Os07g47410
OsAffx.22521.1.S1_x_at--343--1731Chr07:28347071..28347095 (25 bp)
ACCATTGTGCGTGTGTTTCGCGTCG
LOC_Os07g47410
OsAffx.22521.1.S1_x_at--577--4091NONE
CGACGGCGAATTGCTCCAGGAGATG
NONE
OsAffx.22521.1.S1_x_at--560--251Chr07:28347560..28347584 (25 bp)
ATATCTACAGTATTGTCTTCTCCCC
LOC_Os07g47410
OsAffx.22521.1.S1_x_at--1040--7533Chr07:28347594..28347618 (25 bp)
GTGGCTTGCTGTCTCGAGTGATAAA
LOC_Os07g47410
OsAffx.22521.1.S1_x_at--937--8171Chr07:28347619..28347643 (25 bp)
GGAACCGTACATGTTTTTCATATCA
LOC_Os07g47410
OsAffx.22521.1.S1_x_at--63--9611Chr07:28347636..28347660 (25 bp)
TCATATCAATGTTTGTTCGCCATCT
LOC_Os07g47410
OsAffx.22521.1.S1_x_at--123--431Chr07:28347657..28347681 (25 bp)
ATCTTCCTCCAAAACTGGTTGCCAA
LOC_Os07g47410
OsAffx.22521.1.S1_x_at--485--2871Chr07:28347899..28347923 (25 bp)
AAGGTCGGTAGCTCAATTCCATCTA
LOC_Os07g47410
OsAffx.22521.1.S1_x_at--634--6211Chr07:28347996..28348104 (25 bp)
GATGGAAGTTTTTACCGGTGTCAGT
LOC_Os07g47410
OsAffx.22521.1.S1_x_at--27--1791Chr07:28348093..28348117 (25 bp)
ACCGGTGTCAGTTTGATCCAGTAAA
LOC_Os07g47410
Target Sequence 
GGCCAGTGTCAAGGGCACCATTGTGCGTGTGTTTCGCGTCGCCGACGGCGAATTGCTCCAGGAGATGAAAAGAGGCTTCG
ATAGAGCTGATATCTACAGTATTGTCTTCTCCCCCGATTCAGAGTGGCTTGCTGTCTCGAGTGATAAAGGAACCGTACAT
GTTTTTCATATCAATGTTTGTTCGCCATCTTCCTCCAAAACTGGTTGCCAAGATACAACTCAATCATATGAATCATATGG
TGCAAAAGCAATGAAAAAATATGTTTCTTCTATAAAAGATTTACTTACATTAGGATATTTCGATCCAGAAAGGTCGGTAG
CTCAATTCCATCTATGTGATAATGTAAAATACCTTGTCGCATTTGGTACAAGACCAAATAAAAATATTGTTCTTATAATC
GGTATGGATGGAAGTTTTTACCGGTGTCAGTTTGATCCAGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22521.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis