Browse Element(s) Details


OsAffx.22776.1.S1_at

Description gb:NM_184382.1
DB_XREF= gi:34895853
GEN=P0009G03.6
TID=OsAffx.22776.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0009G03.6 (P0009G03.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g057101/11Protein tyrosine phosphatase-like protein, PTPLA containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680Os.12757.3.S1_at11/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.12757.4.S1_x_at9/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.23850.1.A1_at1/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05710OsAffx.22776.2.S1_at10/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.23126.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.22776.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05720OsAffx.22775.1.S1_at8/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05720OsAffx.23126.1.S1_at1/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22776.1.S1_at--935--10331Chr01:2721366..2721573 (25 bp)
TTTTTTGATGGCTTTCGGAAGAAAG
LOC_Os01g05710
OsAffx.22776.1.S1_at--577--6051Chr01:2721608..2721632 (25 bp)
GAGTTATTTTTTGCTGGGTCGGCCA
NONE
OsAffx.22776.1.S1_at--983--4691Chr01:2721620..2721881 (25 bp)
GCTGGGTCGGCCAAAGAATGGAAAT
NONE
OsAffx.22776.1.S1_at--82--10172Chr01:2721895..2721919 (25 bp)
TATACAAGGATTATCTTTTCCCTTG
NONE
OsAffx.22776.1.S1_at--528--751Chr01:2721930..2721954 (25 bp)
ATGTATGCAAGTACCATTCTCATGG
NONE
OsAffx.22776.1.S1_at--1097--6972Chr08:18540587..18540610 (24 bp)
GTACCATTCTCATGGCTTGCTAATG
NONE
OsAffx.22776.1.S1_at--1040--3493Chr01:2721950..2721974 (25 bp)
CATGGCTTGCTAATGGTGTGTTGTA
NONE
OsAffx.22776.1.S1_at--340--6631Chr01:2721969..2721993 (25 bp)
GTTGTACCAAATATGGGCGTTTCCA
NONE
OsAffx.22776.1.S1_at--754--7573Chr08:18540632..18540653 (22 bp)
GGGCGTTTCCATCTGTAAATAAAAT
NONE
OsAffx.22776.1.S1_at--294--51NONE
ATTGTACTCCATAGTGTCATCGCCG
NONE
OsAffx.22776.1.S1_at--906--4311Chr01:2722966..2722985 (20 bp)
CCATAGTGTCATCGCCGCAAAGGGA
NONE
Target Sequence 
TTTTTTGATGGCTTTCGGAAGAAAGCCTTGTCAAAGGCAAAAACCACATAACTACTCAAGAGTTATTTTTTGCTGGGTCG
GCCAAAGAATGGAAATGCTAAAATACAATTATACAAGGATTATCTTTTCCCTTGGTAAATTAGAATGTATGCAAGTACCA
TTCTCATGGCTTGCTAATGGTGTGTTGTACCAAATATGGGCGTTTCCATCTGTAAATAAAATTGTACTCCATAGTGTCAT
CGCCGCAAAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis