Browse Element(s) Details


OsAffx.22776.2.S1_at

Description tigr:9629.m00496
TID=OsAffx.22776.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein tyrosine phosphatase-like protein, PTPLA, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0571010/11Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os08g303402/11protein tyrosine phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05660Os.523.1.S1_at11/111+2695736..2700293expressed protein
LOC_Os01g05670Os.6202.1.S1_a_at11/111+2704304..27082273-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g05680Os.12757.3.S1_at11/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.12757.4.S1_x_at9/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05680Os.23850.1.A1_at1/111+2710075..2714297Prenyltransferase and squalene oxidase repeat family protein, expressed
LOC_Os01g05694Os.12757.1.S1_a_at11/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05694Os.12757.4.S1_x_at1/111+2714638..2718005protein tyrosine phosphatase, putative, expressed
LOC_Os01g05710OsAffx.22776.2.S1_at10/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.23126.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05710OsAffx.22776.1.S1_at1/111+2718449..2721599Protein tyrosine phosphatase-like protein, PTPLA containing protein
LOC_Os01g05720OsAffx.22775.1.S1_at8/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05720OsAffx.23126.1.S1_at1/111+2724937..2727774protein tyrosine phosphatase, putative
LOC_Os01g05730Os.35216.2.S1_x_at11/111+2732311..2734632retrotransposon protein, putative, unclassified
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
GO:0004725molecular_functionprotein tyrosine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22776.2.S1_at--840--9552Chr08:18543313..18543384 (25 bp)
TCTTCATCGGATGGTCACTTCTAGC
LOC_Os08g30340
OsAffx.22776.2.S1_at--924--492Chr08:18543318..18543389 (25 bp)
ATCGGATGGTCACTTCTAGCATCTT
LOC_Os08g30340
OsAffx.22776.2.S1_at--99--9551Chr01:2719544..2719568 (25 bp)
TCTAGCATCTTTGTCTGCTGGTATT
LOC_Os01g05710
OsAffx.22776.2.S1_at--347--3691Chr01:2719552..2719576 (25 bp)
CTTTGTCTGCTGGTATTTCTTGGAT
LOC_Os01g05710
OsAffx.22776.2.S1_at--753--6871Chr01:2719564..2719588 (25 bp)
GTATTTCTTGGATTGGACACTCAGG
LOC_Os01g05710
OsAffx.22776.2.S1_at--1041--9191NONE
TGCCATCATGGAGACGCATTCTCAT
NONE
OsAffx.22776.2.S1_at--1022--10351Chr01:2721367..2721391 (25 bp)
TTTTTGATGGCTTTGTACGTTCCAG
LOC_Os01g05710
OsAffx.22776.2.S1_at--927--8291Chr01:2721375..2721536 (25 bp)
GGCTTTGTACGTTCCAGTATTTCCA
LOC_Os01g05710
OsAffx.22776.2.S1_at--141--6891Chr01:2721528..2721552 (25 bp)
GTATTTCCATACTTGTTGCGCCATA
LOC_Os01g05710
OsAffx.22776.2.S1_at--451--2071Chr01:2721538..2721562 (25 bp)
ACTTGTTGCGCCATATGGTTGCCCA
LOC_Os01g05710
OsAffx.22776.2.S1_at--1064--4551Chr01:2721545..2721569 (25 bp)
GCGCCATATGGTTGCCCAGCGGAAG
LOC_Os01g05710
Target Sequence 
TCTTCATCGGATGGTCACTTCTAGCATCTTTGTCTGCTGGTATTTCTTGGATTGGACACTCAGGGGCTCAGGTGTCATTG
TCCATGATCTTGGCGTTGTTGGATGACGGGCATGAGGCCGTCTATGCTGCTATCGAGCGGCATCTGCTGTTTGCACAGAC
TGCTGCCATCATGGAGACGCATTCTCATATTCTTGTTACCCCCTTGATCATAAGCTGGTCCATCACCGAGAGCATAACTT
CGTGGAAAATTTACTATAATTCCTTGCAGGTCATCAGATATTCCTTCTTTGGCATAAAGGAATCATTTGGATTTACACCT
TCCTGGCTCTTATGGCTTAGGTACAGCACCTTTATAGTATGCTATCCTGTTGGTATGGTTAGTGAGGTTGGCCTAATCTA
TATTGCCTTCCCTTTCATGAAGGCATCTGAGAAATACTGCATTGGGATGCCCAACAAATGGAATTTCTCCTTCGACTACT
TCTATTTCTCTACTTTTTTGATGGCTTTGTACGTTCCAGTATTTCCATACTTGTTGCGCCATATGGTTGCCCAGCGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22776.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis