Browse Element(s) Details


OsAffx.23038.1.S1_x_at

Description tigr:9629.m00077
TID=OsAffx.23038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0173011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01700Os.20521.1.S2_at8/111+368633..371215RING-box protein 1, putative, expressed
LOC_Os01g01710Os.1005.1.S1_at10/111+371530..3775181-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g01720Os.27278.1.S1_s_at11/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.27278.1.S1_at10/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.32421.1.A1_at9/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01730OsAffx.23038.1.S1_x_at11/111+386853..387425hypothetical protein
LOC_Os01g01730OsAffx.23038.1.S1_at11/111+386853..387425hypothetical protein
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23038.1.S1_x_at--184--511Chr01:386988..387012 (25 bp)
ATCGTGCTCGTCTGCTACGCCGACA
LOC_Os01g01730
OsAffx.23038.1.S1_x_at--66--971Chr01:387064..387088 (25 bp)
AGGACGAGGACAATAATGCCACGCC
LOC_Os01g01730
OsAffx.23038.1.S1_x_at--756--9031Chr01:387104..387128 (25 bp)
TGCTTCTTCCCTTAAGGACCGCCAG
LOC_Os01g01730
OsAffx.23038.1.S1_x_at--46--10631Chr01:387182..387206 (25 bp)
TTCGTCTTCATCATCCGAGTCCTCG
LOC_Os01g01730
OsAffx.23038.1.S1_x_at--876--9571Chr01:387180..387204 (25 bp)
TCTTCGTCTTCATCATCCGAGTCCT
LOC_Os01g01730
OsAffx.23038.1.S1_x_at--512--9411Chr01:387246..387270 (25 bp)
TCGTCGGATGATGACCTAGCGCGGC
LOC_Os01g01730
OsAffx.23038.1.S1_x_at--455--6291Chr01:387252..387276 (25 bp)
GATGATGACCTAGCGCGGCGACGTC
LOC_Os01g01730
OsAffx.23038.1.S1_x_at--124--8391Chr01:387268..387292 (25 bp)
GGCGACGTCAGCAGAGAAACCCTTC
LOC_Os01g01730
OsAffx.23038.1.S1_x_at--1060--4211Chr01:387300..387324 (25 bp)
CCGCAGTACAAGAAGGAGGCAAGGA
LOC_Os01g01730
OsAffx.23038.1.S1_x_at--573--2911Chr01:387312..387336 (25 bp)
AAGGAGGCAAGGAGGAGCCCTTCTC
LOC_Os01g01730
OsAffx.23038.1.S1_x_at--356--7091Chr01:387356..387380 (25 bp)
GTCAACCTCAAGCTCTAGCTCGAGC
LOC_Os01g01730
Target Sequence 
ATCGTGCTCGTCTGCTACGCCGACATCTGCGGCCGCCTCGCCACGCTCCACTCGCAGACGCAGACGCCGGCGGGGGAGGA
CGAGGACAATAATGCCACGCCGCCGGAGGCTCCTGCTGCTTCTTCCCTTAAGGACCGCCAGCGCTCCAGCCATGGCACCG
ACACCTCCTCCTCCTCCGAGTCGTCGTCGTCGTCTTCGTCTTCATCATCCGAGTCCTCGTCCTCGTCTTCGTCTTCATCA
TCCGAGTCCTCCTCCTCGTCGTCGGATGATGACCTAGCGCGGCGACGTCAGCAGAGAAACCCTTCTCCTCCGCCGCAGTA
CAAGAAGGAGGCAAGGAGGAGCCCTTCTCCATCGCCGCCATCGTCGTCGTCAACCTCAAGCTCTAGCTCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23038.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis