Browse Element(s) Details


OsAffx.23236.1.S1_at

Description tigr:9629.m01402
TID=OsAffx.23236.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1425011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14200NANA1+7950225..7961102AT hook motif-containing protein, putative, expressed
LOC_Os01g14210OsAffx.1999.3.S1_at11/111+7966664..7967557hypothetical protein
LOC_Os01g14220OsAffx.1999.1.S1_at11/111+7970447..7971613hypothetical protein
LOC_Os01g14220OsAffx.1999.2.S1_s_at1/111+7970447..7971613hypothetical protein
LOC_Os01g14230OsAffx.11047.1.S1_at11/111+7977444..7978379hypothetical protein
LOC_Os01g14240OsAffx.22047.1.S1_at8/111+7981429..7981748hypothetical protein
LOC_Os01g14250OsAffx.23236.1.S1_at11/111+7985738..7987269hypothetical protein
LOC_Os01g14260OsAffx.29789.3.S1_x_at9/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.29789.1.S1_x_at7/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14260OsAffx.31885.2.S1_x_at2/111+7989842..7993957hAT family dimerisation domain containing protein
LOC_Os01g14270OsAffx.22046.1.S1_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_s_at11/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.2.S1_at8/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_x_at3/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.22046.3.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270Os.57198.1.S1_at2/111+7994293..7999812F-box domain containing protein
LOC_Os01g14270OsAffx.27239.2.S1_at1/111+7994293..7999812F-box domain containing protein
LOC_Os01g14280OsAffx.2002.1.S1_s_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14280OsAffx.2002.2.S1_at11/111+8000882..8002018hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.1.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_x_at10/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.3.S1_x_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.3.S1_x_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.18.S1_x_at5/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.31552.2.S1_at1/111+8003677..8006140hypothetical protein
LOC_Os01g14300OsAffx.9860.1.S1_x_at2/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14300OsAffx.11047.1.S1_at1/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23236.1.S1_at--505--7531Chr01:7986306..7986330 (25 bp)
GTGGCAGCGTCACCGCTGGCGGTGG
LOC_Os01g14250
OsAffx.23236.1.S1_at--836--3891Chr01:7986230..7986254 (25 bp)
CTGTGTGGCCGAGGCTCTCGAGCCA
LOC_Os01g14250
OsAffx.23236.1.S1_at--356--911Chr01:7986219..7986243 (25 bp)
AGGCTCTCGAGCCACGAGATCTGGC
LOC_Os01g14250
OsAffx.23236.1.S1_at--612--1691Chr01:7986210..7986234 (25 bp)
AGCCACGAGATCTGGCCGTTGCCGT
LOC_Os01g14250
OsAffx.23236.1.S1_at--1106--9171Chr01:7986191..7986215 (25 bp)
TGCCGTTGTCGTCGAACTAGACGAG
LOC_Os01g14250
OsAffx.23236.1.S1_at--1020--9351Chr01:7986180..7986204 (25 bp)
TCGAACTAGACGAGGCTAGCCACCG
LOC_Os01g14250
OsAffx.23236.1.S1_at--342--3951Chr01:7986043..7986067 (25 bp)
CGGACAACCGCCGAGGCCACCAGAT
LOC_Os01g14250
OsAffx.23236.1.S1_at--247--1291Chr01:7986022..7986046 (25 bp)
AGATCCGCCGTCTTGGCCGGAGAGA
LOC_Os01g14250
OsAffx.23236.1.S1_at--430--9592Chr06:10698459..10698479 (21 bp)
TCTTGGCCGGAGAGATGCCGAGCTC
NONE
OsAffx.23236.1.S1_at--706--3351Chr01:7985978..7986002 (25 bp)
CACCGCCACGGATAAGCTGCGGCGG
LOC_Os01g14250
OsAffx.23236.1.S1_at--988--6211Chr01:7985878..7985902 (25 bp)
GAGGCGCGAGTGAGGCGGCGTGGTC
LOC_Os01g14250
Target Sequence 
GTGGCAGCGTCACCGCTGGCGGTGGCGTTGAGGACGGCGAACTCGTCGAGGCTGATGAAGCCGTCGCCGCCGGTGGCTGT
GTGGCCGAGGCTCTCGAGCCACGAGATCTGGCCGTTGCCGTTGTCGTCGAACTAGACGAGGCTAGCCACCGCCGACGGAG
TCTGCCCTGCTCCGGACCGCCGCCACCTTCTCCATCTCCACCTCCTTCTCGGCCGCGGCCCTTCACCGCCGCCTCGAATC
GCTCGCCGCTCCAGGGCCTCACGCGGACAACCGCCGAGGCCACCAGATCCGCCGTCTTGGCCGGAGAGATGCCGAGCTCT
GCCGCCAACACCGCCACGGATAAGCTGCGGCGGCGGTGGACGGAGACAGACGTGGGAGGAGGCCTCGGCCGCCGCTGCTC
GCGGTCGCCGTGGTGGAGGAGGCGCGGCGAGGCGCGAGTGAGGCGGCGTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis