Browse Element(s) Details


OsAffx.23682.1.S1_at

Description gb:NM_192349.1
DB_XREF= gi:34911781
GEN=OJ1316_H05.18
TID=OsAffx.23682.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1316_H05.18 (OJ1316_H05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g460508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46010OsAffx.21460.2.S1_s_at11/111+26481478..26482627hypothetical protein
LOC_Os01g46010OsAffx.21460.1.S1_at9/111+26481478..26482627hypothetical protein
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g46080Os.54427.1.A1_at11/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.34087.4.S1_x_at2/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.21387.3.S1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.35566.1.A1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46090Os.34087.4.S1_x_at2/111+26530063..26533764GDSL-like Lipase/Acylhydrolase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23682.1.S1_at--245--4611Chr01:26506856..26506880 (25 bp)
GCGACGAAGTGCAGATCGACATCGA
NONE
OsAffx.23682.1.S1_at--946--511Chr01:26506748..26506860 (25 bp)
ATCGATCGGCGAAGAATGCTGTTCA
NONE
OsAffx.23682.1.S1_at--84--631Chr01:26506733..26506756 (24 bp)
ATGCTGTTCAGCGTCTCACTGGTGC
NONE
OsAffx.23682.1.S1_at--910--4071Chr01:26506580..26506604 (25 bp)
CGAGAACTACCACGCGTGCGTCGGA
LOC_Os01g46050
OsAffx.23682.1.S1_at--773--4791Chr01:26506548..26506572 (25 bp)
GCTCCGTGCTTGAGGTGTCGTACCA
LOC_Os01g46050
OsAffx.23682.1.S1_at--661--1051Chr01:26506536..26506560 (25 bp)
AGGTGTCGTACCACGGCATGGCCGT
LOC_Os01g46050
OsAffx.23682.1.S1_at--1074--9031Chr01:26506497..26506521 (25 bp)
TGCCGCGGTTCTGCGTCCACGGGAA
LOC_Os01g46050
OsAffx.23682.1.S1_at--1129--2871Chr01:26506339..26506363 (25 bp)
AAGGGCTTCGGCTATCTCCGCTGCA
LOC_Os01g46050
OsAffx.23682.1.S1_at--907--10151Chr01:26506327..26506351 (25 bp)
TATCTCCGCTGCAAGGCGCTCTGGT
LOC_Os01g46050
OsAffx.23682.1.S1_at--676--2951Chr01:26506315..26506339 (25 bp)
AAGGCGCTCTGGTTCCGGGATGACA
LOC_Os01g46050
OsAffx.23682.1.S1_at--668--3771Chr01:26506309..26506333 (25 bp)
CTCTGGTTCCGGGATGACAAGCGGA
LOC_Os01g46050
Target Sequence 
GCGACGAAGTGCAGATCGACATCGATCGGCGAAGAATGCTGTTCAGCGTCTCACTGGTGCTCCTCCTGGAGTACATCATC
CGCCCGCCCGCCCCGACCCCGTTCCTCGTCCTCGCCCGCGCCGACGGGCTCGACGACACCACCGGCGCCCCCGGCATGGG
CGTGGTCGGCCTCGCCGAGAACTACCACGCGTGCGTCGGAGGGGGCGGCTCCGTGCTTGAGGTGTCGTACCACGGCATGG
CCGTCGCCATGGGCCGCGTGCCGCGGTTCTGCGTCCACGGGAAGCGGGCGGGCGGCGAGCGGGCCGACGGCGTGGCCAGC
GCGGAGGCGACGTCGGTGCGCGAGGAGCTGCGCGGCCTGATCCGGAGCGAGCGGCAGATCGTGGGGGCGGCCGAGTTCAG
CGTGGAAGGGGAGATCAAGGGCTTCGGCTATCTCCGCTGCAAGGCGCTCTGGTTCCGGGATGACAAGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis