Browse Element(s) Details


OsAffx.23699.1.S1_at

Description tigr:9629.m04543
TID=OsAffx.23699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4739011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein
LOC_Os01g47400Os.10006.2.S1_x_at11/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47400Os.10006.1.S1_at10/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47410Os.13741.1.S1_s_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_x_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_at10/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.51743.1.S1_at1/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47420Os.17029.1.S1_at11/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47420OsAffx.21425.1.S1_at10/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47430Os.14874.2.S1_x_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.1.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.2.S1_at11/111+27428979..27436834expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23699.1.S1_at--720--8411Chr01:27403427..27403451 (25 bp)
GGCCCCGACGACATGCGCTTGATCT
LOC_Os01g47390
OsAffx.23699.1.S1_at--50--5791Chr01:27403433..27403457 (25 bp)
GACGACATGCGCTTGATCTTGACGC
LOC_Os01g47390
OsAffx.23699.1.S1_at--692--8251Chr01:27403462..27403486 (25 bp)
GGCAGCCGGGAAGCGCTATCTCCGA
LOC_Os01g47390
OsAffx.23699.1.S1_at--185--1671Chr01:27403465..27403489 (25 bp)
AGCCGGGAAGCGCTATCTCCGAGCT
LOC_Os01g47390
OsAffx.23699.1.S1_at--732--7611Chr01:27403469..27403493 (25 bp)
GGGAAGCGCTATCTCCGAGCTCACC
LOC_Os01g47390
OsAffx.23699.1.S1_at--705--6351Chr01:27403517..27403541 (25 bp)
GATGCCTGCTCGTGGCGCCCAATAA
LOC_Os01g47390
OsAffx.23699.1.S1_at--482--7551Chr01:27403528..27403552 (25 bp)
GTGGCGCCCAATAATGTGCTCGTCA
LOC_Os01g47390
OsAffx.23699.1.S1_at--609--8391Chr01:27403530..27403554 (25 bp)
GGCGCCCAATAATGTGCTCGTCACC
LOC_Os01g47390
OsAffx.23699.1.S1_at--278--6671Chr01:27403578..27403602 (25 bp)
GTTGCCGGACCCTTAGACCACCTGG
LOC_Os01g47390
OsAffx.23699.1.S1_at--241--4331Chr01:27403630..27403654 (25 bp)
CCATCTTGTGCTTGGCAGCGGTATC
LOC_Os01g47390
OsAffx.23699.1.S1_at--172--10831Chr01:27403635..27403659 (25 bp)
TTGTGCTTGGCAGCGGTATCGCCCG
LOC_Os01g47390
Target Sequence 
GGCCCCGACGACATGCGCTTGATCTTGACGCTCGCGGCAGCCGGGAAGCGCTATCTCCGAGCTCACCGTGTCACCGTCCT
CGACCTCACCGATGCCTGCTCGTGGCGCCCAATAATGTGCTCGTCACCGCCACCACCAGCTGCGCCTCATCGTTGCCGGA
CCCTTAGACCACCTGGCCCTCGCCAACGACCTCCTCGTTGTCGCCATCTTGTGCTTGGCAGCGGTATCGCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis