Browse Element(s) Details


OsAffx.24356.1.S1_at

Description tigr:9630.m02006
TID=OsAffx.24356.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F12A21.9, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2095010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20920OsAffx.29738.4.S1_s_at11/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.54718.1.S1_at2/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.57571.1.S2_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20920OsAffx.29738.1.S1_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20930Os.11996.1.S1_at11/112+12365584..12375312Apoptosis inhibitory protein 5 containing protein, expressed
LOC_Os02g20940OsAffx.2704.1.S1_s_at11/112+12382079..12383625CHCH domain containing protein, expressed
LOC_Os02g20950Os.10252.1.S1_s_at11/112+12387114..12394238expressed protein
LOC_Os02g20950OsAffx.24356.1.S1_at10/112+12387114..12394238expressed protein
LOC_Os02g20960OsAffx.12140.1.S1_at10/112+12396205..12397782expressed protein
LOC_Os02g20970Os.33238.2.S1_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20970Os.33238.1.S1_x_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20980OsAffx.3097.1.S1_s_at9/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_at7/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_x_at6/112+12414560..12421423hypothetical protein
LOC_Os02g20980OsAffx.3097.1.S1_x_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.15211.1.S1_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_x_at2/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_at2/112+12414560..12421423hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24356.1.S1_at--800--671Chr02:12391134..12391158 (25 bp)
ATGACATGAAAGAAGGAGCAACCCC
LOC_Os02g20950
OsAffx.24356.1.S1_at--70--8071Chr02:12391148..12391172 (25 bp)
GGAGCAACCCCTATTGAAGGAAACA
LOC_Os02g20950
OsAffx.24356.1.S1_at--625--2311Chr02:12391204..12391228 (25 bp)
AAAGGAAGTCAAGCTGACAGCCATA
LOC_Os02g20950
OsAffx.24356.1.S1_at--1080--2731Chr02:12392048..12392072 (25 bp)
AAGAAGCTGGGAACTGTCCTTAGGA
LOC_Os02g20950
OsAffx.24356.1.S1_at--192--1951Chr02:12392060..12392084 (25 bp)
ACTGTCCTTAGGAGCAAGCCTTTGA
LOC_Os02g20950
OsAffx.24356.1.S1_at--697--1471Chr02:12392072..12392096 (25 bp)
AGCAAGCCTTTGATGTTAGAGGACA
LOC_Os02g20950
OsAffx.24356.1.S1_at--93--1631Chr02:12392112..12392136 (25 bp)
AGCTGGATGGCTATTCGAACAACAA
LOC_Os02g20950
OsAffx.24356.1.S1_at--1053--5491Chr02:12392128..12392152 (25 bp)
GAACAACAAGATGCTATTGCTGCAA
LOC_Os02g20950
OsAffx.24356.1.S1_at--271--191Chr02:12392258..12392282 (25 bp)
ATTTCACTGGAAATGACATCTGGTT
LOC_Os02g20950
OsAffx.24356.1.S1_at--590--5671Chr02:12392272..12392296 (25 bp)
GACATCTGGTTTGAGTTCACTGAAG
LOC_Os02g20950
OsAffx.24356.1.S1_at--508--9031NONE
TGCAGCCATAAGGAAAGTTTCTCTT
NONE
Target Sequence 
ATGACATGAAAGAAGGAGCAACCCCTATTGAAGGAAACAGAAATCAGCTTATTTCTGATATAAAGAAGGCAAAGGAAGTC
AAGCTGACAGCCATAAAAGAGAAGAAGCTGGGAACTGTCCTTAGGAGCAAGCCTTTGATGTTAGAGGACAGGGAGGCATA
CTGGAAGCTGGATGGCTATTCGAACAACAAGATGCTATTGCTGCAAGAATTTGATAATGAGAATTTCACTGGAAATGACA
TCTGGTTTGAGTTCACTGAAGATGAAGAAAAAACAATTGAAAATCATGCAGCCATAAGGAAAGTTTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis