Browse Element(s) Details


OsAffx.2471.2.S1_at

Description tigr:9629.m07291
TID=OsAffx.2471.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7360411/11Sm protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein
LOC_Os01g73630Os.30910.1.S1_at9/111+42981345..42982564rac GTPase activating protein 1, putative, expressed
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2471.2.S1_at--921--8391Chr01:42970208..42970232 (25 bp)
GGCGCGTCGTACTGCGTCCAGATGA
LOC_Os01g73604
OsAffx.2471.2.S1_at--873--1291Chr01:42970189..42970213 (25 bp)
AGATGAGGTCGCTACCCGTGTCGAG
LOC_Os01g73604
OsAffx.2471.2.S1_at--62--9971Chr01:42970177..42970201 (25 bp)
TACCCGTGTCGAGCACTGCGGTGAG
LOC_Os01g73604
OsAffx.2471.2.S1_at--1048--1491Chr01:42970166..42970190 (25 bp)
AGCACTGCGGTGAGCGGGAGCGGCT
LOC_Os01g73604
OsAffx.2471.2.S1_at--109--3851Chr01:42969951..42969975 (25 bp)
CTGCAGGACGTAGTGGTGGTGATTC
LOC_Os01g73604
OsAffx.2471.2.S1_at--8--7491Chr01:42969939..42969963 (25 bp)
GTGGTGGTGATTCCGAGGGCGCCGA
LOC_Os01g73604
OsAffx.2471.2.S1_at--493--6131Chr01:42969925..42969949 (25 bp)
GAGGGCGCCGAATGACAGCATCTGC
LOC_Os01g73604
OsAffx.2471.2.S1_at--254--4231Chr01:42969918..42969942 (25 bp)
CCGAATGACAGCATCTGCGCGGCGC
LOC_Os01g73604
OsAffx.2471.2.S1_at--641--4971Chr01:42969681..42969705 (25 bp)
GCATCTTCCTGCCTAGGCGTGAGAA
LOC_Os01g73604
OsAffx.2471.2.S1_at--1125--9251Chr01:42969675..42969699 (25 bp)
TCCTGCCTAGGCGTGAGAACTGAGA
LOC_Os01g73604
OsAffx.2471.2.S1_at--273--3711Chr01:42969669..42969693 (25 bp)
CTAGGCGTGAGAACTGAGACGTTGA
LOC_Os01g73604
Target Sequence 
GGCGCGTCGTACTGCGTCCAGATGAGGTCGCTACCCGTGTCGAGCACTGCGGTGAGCGGGAGCGGCTGTCGTGGACGCTG
CTGATGCTGGCGGCGCACCCGGAGTGGCAGGCGGCGGTGCGGGAGGAGGTGGTGGAGGCGGCCGGGCGGTCGGGCCTCCT
CGACGCGGCGGCGCTGGGGAAGCTGACGAAGATGGGGTGCGTGCTGAACGAGGTGCTCCGGCTGTACCAGCCGTCGCCGA
ACGTGCAAAGGCAGGCGCTGCAGGACGTAGTGGTGGTGATTCCGAGGGCGCCGAATGACAGCATCTGCGCGGCGCTGTGG
AGGCGGCGTGGCTGGCGACAGCGAGGTCGCCGCTCGCCCGCTCACCCACCGTGGCTCCGTATGGGGAGAGGCGGCGGCGC
CCGCTGCTCCCGCCGTCGCGGGCGGTCGCGCCGGCCGCCTCCTCTCCCCCTCTCCAGCTTCTTCCCCGCGCGTCGCAGCG
CCCGCTGCGCCGGCAGCCGCGCCCGCTCCGCCGTCGGCCGCACACCTGCATCTTCCTGCCTAGGCGTGAGAACTGAGACG
TTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2471.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis