Browse Element(s) Details


OsAffx.2524.2.S1_at

Description tigr:9630.m00594
TID=OsAffx.2524.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0661011/11expressed protein
LOC_Os08g243502/11hypothetical protein
LOC_Os02g291601/11ankyrin-like protein, putative, expressed
LOC_Os01g594201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06584Os.15553.1.S1_at11/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06584Os.25379.1.A1_at10/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06588Os.53125.1.S1_at10/112+3311243..3313540SNF2 domain-containing protein, putative, expressed
LOC_Os02g06592Os.16806.1.S1_at11/112+3313843..3318382TATA-binding-protein-associated factor 172, putative, expressed
LOC_Os02g06600OsAffx.24133.2.S1_at3/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06600Os.34424.1.S1_at2/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0005515molecular_functionprotein binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2524.2.S1_at--936--7311Chr02:3329381..3329405 (25 bp)
GTGCTCAGGCACCACGTGTTGAATA
LOC_Os02g06610
OsAffx.2524.2.S1_at--283--2314Chr09:8893780..8893801 (22 bp)
AAAGTCCAAGCGTGAGCAGTGCGGA
NONE
OsAffx.2524.2.S1_at--538--1771Chr02:3329137..3329161 (25 bp)
ACCGGCAAGAGTGCTGTGGTCGAAA
LOC_Os02g06610
OsAffx.2524.2.S1_at--148--2778Chr08:14565864..14565888 (25 bp)
AAGACGGTGACACAATCGCGGCAGT
LOC_Os08g24350
OsAffx.2524.2.S1_at--806--3194Chr08:14565876..14566170 (25 bp)
CAATCGCGGCAGTCGTTGAGGAAGA
LOC_Os08g24350
OsAffx.2524.2.S1_at--38--1391Chr02:3328929..3328953 (25 bp)
AGACGAGACGTCATGCCGGATTTGC
LOC_Os02g06610
OsAffx.2524.2.S1_at--212--6151Chr02:3328836..3328860 (25 bp)
GAGGTGTTGCCTCTCAGTGTTCCAA
LOC_Os02g06610
OsAffx.2524.2.S1_at--1044--3372Chr06:14399093..14399113 (21 bp)
CAGCGGCAACCCGAAGTTTGATAGT
NONE
OsAffx.2524.2.S1_at--1008--1191Chr02:3328744..3328768 (25 bp)
AGTTTGATAGTGTAGACGCGTGCTT
LOC_Os02g06610
OsAffx.2524.2.S1_at--723--10031Chr02:3328732..3328756 (25 bp)
TAGACGCGTGCTTGATGCCGATCGG
LOC_Os02g06610
OsAffx.2524.2.S1_at--940--591Chr02:3328718..3328742 (25 bp)
ATGCCGATCGGTTGTAGAAGTCGTT
LOC_Os02g06610
Target Sequence 
GTGCTCAGGCACCACGTGTTGAATAGTATAGGAAAGTCCAAGCGTGAGCAGTGCGGACACTTAGACTGGAGAAGAAACCG
GCAAGAGTGCTGTGGTCGAAAAATAGATGTCGAGAGTGGTCGTGGACGCACGGGAGGGGCATCGTGGACCAAGGTGCGCG
AGGATGCGCGGGAGACGAAGACGGTGACACAATCGCGGCAGTCGTTGAGGAAGATGATGCCGAAGAGCCGATGTAGTCGA
ACCGTGAAAGACGAGACGTCATGCCGGATTTGCCAGACCCGGGGACAACTCGGGACGAACACGCGCGCCGGTGTTGCCAA
TACCGCGCGGGCGAGGCAGTGGAGGTGTTGCCTCTCAGTGTTCCAACAACCAGTGGAGGTGGACCATGGGCGGCGACACT
GCAGCCCAAGAGGGCGATGCAGCGGCAACCCGAAGTTTGATAGTGTAGACGCGTGCTTGATGCCGATCGGTTGTAGAAGT
CGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2524.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis